| TF name | Position | PWM scan score |
| DcuR | 342-396 | 25.105 |
| ArcA | 265-325 | 21.667 |
| AgaR | 306-329 | 17.711 |
| OmpR | 303-322 | 16.798 |
| CysB | 311-352 | 16.557 |
| RcsB | 356-369 | 16.255 |
| MarA | 81-101 | 15.839 |
| GadE | 159-178 | 15.605 |
| DeoR | 322-337 | 15.591 |
| Mlc | 370-392 | 15.144 |
| Nac | 70-84 | 15.042 |
| PspF | 245-261 | 14.902 |
| CpxR | 313-327 | 14.694 |
| CRP | 154-175 | 14.585 |
| FNR | 63-84 | 13.554 |
| H-NS | 315-329 | 13.469 |
| MelR | 191-208 | 13.462 |
| IHF | 310-322 | 13.234 |
| PurR | 276-291 | 12.475 |
| NagC | 372-394 | 12.450 |
| Lrp | 355-366 | 12.448 |
| PhoB | 237-256 | 12.395 |
| UlaR | 202-221 | 12.056 |
| SoxS | 83-100 | 11.973 |
| Fis | 84-104 | 11.830 |
| Ada | 300-327 | 11.670 |
| PhoP | 312-328 | 11.356 |
| IdnR | 147-162 | 11.114 |
| ArgR | 309-324 | 10.959 |
| AraC | 163-180 | 10.921 |
| ArgP | 90-102 | 10.729 |
| GalR | 276-291 | 10.367 |
| GalS | 276-291 | 10.367 |
| FadR | 189-205 | 10.181 |
| NorR | 367-383 | 9.926 |
| CytR | 335-374 | 9.647 |
| GcvA | 92-120 | 9.451 |
| OxyR | 351-395 | 9.045 |
| XylR | 273-290 | 8.965 |
| MetR | 197-220 | 8.854 |
| Rob | 113-133 | 8.652 |
| GlpR | 282-301 | 8.546 |
| NarP | 127-133 | 8.509 |
| TorR | 141-150 | 8.466 |
| Fur | 121-135 | 8.419 |
| NarL | 309-315 | 7.927 |
| GntR | 262-281 | 7.919 |
| NtrC | 88-104 | 7.568 |
| UxuR | 304-321 | 7.493 |
| MalT | 35-44 | 6.822 |
| TyrR | 356-377 | 6.734 |
| MetJ | 2-9 | 6.602 |
| DnaA | 295-303 | 5.891 |
| LacI | 281-301 | 5.844 |
| ModE | 302-328 | 5.816 |
| LexA | 153-172 | 5.203 |