| TF name | Position | PWM scan score |
| ArcA | 260-320 | 38.653 |
| CytR | 296-335 | 22.937 |
| CysB | 263-304 | 22.718 |
| OmpR | 284-303 | 20.876 |
| NagC | 375-397 | 20.158 |
| OxyR | 272-316 | 20.138 |
| Fur | 102-116 | 18.914 |
| GcvA | 300-328 | 18.434 |
| Mlc | 372-394 | 18.321 |
| GadE | 285-304 | 18.222 |
| GntR | 16-35 | 17.390 |
| AgaR | 7-30 | 17.332 |
| H-NS | 19-33 | 17.190 |
| Fis | 287-307 | 16.360 |
| CRP | 18-39 | 15.943 |
| DcuR | 266-320 | 15.580 |
| PhoP | 291-307 | 15.347 |
| FNR | 304-325 | 15.166 |
| XylR | 294-311 | 15.049 |
| PurR | 351-366 | 14.388 |
| ArgR | 279-294 | 14.019 |
| MelR | 308-325 | 14.001 |
| UxuR | 287-304 | 13.513 |
| IdnR | 102-117 | 13.444 |
| Nac | 17-31 | 12.744 |
| IHF | 108-120 | 12.667 |
| GlpR | 310-329 | 12.398 |
| DeoR | 376-391 | 12.393 |
| CpxR | 282-296 | 12.226 |
| UlaR | 347-366 | 11.888 |
| Rob | 341-361 | 11.608 |
| Lrp | 249-260 | 11.577 |
| PhoB | 159-178 | 11.427 |
| ArgP | 22-34 | 11.357 |
| RcsB | 119-132 | 11.024 |
| TorR | 246-255 | 10.851 |
| TyrR | 277-298 | 10.818 |
| SoxS | 15-32 | 10.447 |
| ModE | 283-309 | 10.368 |
| FruR | 105-122 | 9.914 |
| Ada | 1-28 | 9.800 |
| AraC | 367-384 | 9.786 |
| NorR | 124-140 | 9.765 |
| LexA | 380-399 | 9.082 |
| GalS | 351-366 | 9.035 |
| GalR | 351-366 | 9.035 |
| LacI | 357-377 | 9.024 |
| DnaA | 320-328 | 8.866 |
| MarA | 253-273 | 8.674 |
| NarL | 98-104 | 7.995 |
| PspF | 267-283 | 7.865 |
| NarP | 236-242 | 7.762 |
| CaiF | 246-290 | 7.570 |
| MetJ | 146-153 | 7.524 |
| MetR | 361-384 | 6.985 |
| MalT | 131-140 | 6.908 |
| NtrC | 81-97 | 6.792 |
| FadR | 225-241 | 6.654 |
| CueR | 311-329 | 6.151 |