| TF name | Position | PWM scan score |
| ArcA | 158-218 | 37.314 |
| CysB | 155-196 | 31.133 |
| NagC | 361-383 | 24.527 |
| CytR | 158-197 | 21.325 |
| Mlc | 235-257 | 20.316 |
| OxyR | 132-176 | 20.202 |
| AgaR | 74-97 | 18.941 |
| DcuR | 81-135 | 18.914 |
| OmpR | 237-256 | 18.742 |
| PhoB | 128-147 | 17.926 |
| RcsB | 208-221 | 17.859 |
| FNR | 175-196 | 16.972 |
| GcvA | 369-397 | 16.951 |
| Nac | 237-251 | 16.113 |
| PspF | 162-178 | 15.849 |
| CaiF | 102-146 | 14.951 |
| GadE | 125-144 | 14.813 |
| Fur | 202-216 | 14.802 |
| ArgR | 368-383 | 14.626 |
| IHF | 205-217 | 14.486 |
| LexA | 18-37 | 14.382 |
| Fis | 115-135 | 14.168 |
| CRP | 146-167 | 14.154 |
| Ada | 192-219 | 13.520 |
| H-NS | 374-388 | 13.308 |
| DeoR | 362-377 | 13.273 |
| MarA | 110-130 | 13.230 |
| TyrR | 91-112 | 13.166 |
| XylR | 373-390 | 12.965 |
| MelR | 299-316 | 12.913 |
| SoxS | 140-157 | 12.854 |
| ModE | 146-172 | 12.811 |
| UlaR | 161-180 | 12.441 |
| ArgP | 121-133 | 12.254 |
| Lrp | 238-249 | 12.202 |
| AraC | 76-93 | 12.173 |
| Rob | 133-153 | 11.950 |
| FruR | 143-160 | 11.326 |
| PhoP | 121-137 | 11.314 |
| TorR | 75-84 | 10.288 |
| CpxR | 225-239 | 9.879 |
| NorR | 148-164 | 9.859 |
| DnaA | 382-390 | 9.795 |
| GlpR | 359-378 | 9.785 |
| MetR | 197-220 | 9.618 |
| NarL | 207-213 | 9.444 |
| UxuR | 151-168 | 9.118 |
| GntR | 208-227 | 8.576 |
| LacI | 192-212 | 8.517 |
| FhlA | 325-364 | 8.414 |
| IdnR | 82-97 | 7.810 |
| NtrC | 230-246 | 7.122 |
| NarP | 208-214 | 6.591 |
| MetJ | 312-319 | 6.561 |
| TrpR | 170-187 | 5.999 |
| MalT | 233-242 | 5.958 |