| TF name | Position | PWM scan score |
| ArcA | 283-343 | 35.264 |
| OmpR | 100-119 | 22.524 |
| CytR | 319-358 | 21.740 |
| NagC | 137-159 | 19.868 |
| MetR | 204-227 | 19.561 |
| CysB | 273-314 | 19.455 |
| FNR | 104-125 | 19.343 |
| DcuR | 307-361 | 18.827 |
| H-NS | 266-280 | 18.325 |
| PhoP | 311-327 | 17.740 |
| ArgR | 94-109 | 17.113 |
| Fur | 267-281 | 16.807 |
| GcvA | 95-123 | 16.722 |
| ModE | 91-117 | 16.356 |
| MelR | 275-292 | 16.325 |
| CRP | 314-335 | 16.297 |
| AgaR | 217-240 | 15.993 |
| Mlc | 226-248 | 15.903 |
| GadE | 138-157 | 15.602 |
| PhoB | 296-315 | 15.236 |
| XylR | 289-306 | 15.023 |
| OxyR | 306-350 | 14.712 |
| SoxS | 232-249 | 14.298 |
| UlaR | 344-363 | 13.894 |
| DeoR | 106-121 | 13.723 |
| Fis | 102-122 | 13.423 |
| TyrR | 346-367 | 13.297 |
| IHF | 95-107 | 13.020 |
| Nac | 56-70 | 12.673 |
| IdnR | 296-311 | 12.618 |
| RcsB | 348-361 | 12.247 |
| Lrp | 264-275 | 12.127 |
| MarA | 308-328 | 12.112 |
| Rob | 291-311 | 11.307 |
| FadR | 335-351 | 11.272 |
| ArgP | 271-283 | 10.977 |
| Ada | 82-109 | 10.700 |
| AraC | 60-77 | 10.168 |
| GntR | 105-124 | 10.111 |
| GlpR | 150-169 | 10.110 |
| PspF | 148-164 | 9.829 |
| DnaA | 66-74 | 9.464 |
| NarP | 329-335 | 9.455 |
| NarL | 269-275 | 9.444 |
| TorR | 223-232 | 9.392 |
| CpxR | 97-111 | 9.380 |
| MalT | 218-227 | 9.285 |
| FruR | 92-109 | 8.487 |
| NtrC | 23-39 | 8.374 |
| FhlA | 101-140 | 7.934 |
| UxuR | 48-65 | 7.815 |
| LexA | 92-111 | 7.026 |
| PurR | 31-46 | 6.386 |
| NorR | 45-61 | 6.199 |
| TrpR | 294-311 | 6.041 |
| MetJ | 140-147 | 5.744 |