| TF name | Position | PWM scan score |
| ArcA | 323-383 | 27.820 |
| CysB | 202-243 | 26.670 |
| OxyR | 96-140 | 20.611 |
| OmpR | 341-360 | 20.499 |
| CytR | 211-250 | 19.169 |
| AgaR | 353-376 | 17.153 |
| NagC | 286-308 | 16.656 |
| FNR | 283-304 | 16.588 |
| MarA | 298-318 | 15.191 |
| PhoP | 340-356 | 15.087 |
| GadE | 196-215 | 14.213 |
| UlaR | 372-391 | 13.735 |
| Fis | 289-309 | 13.713 |
| PhoB | 124-143 | 13.246 |
| AraC | 278-295 | 13.033 |
| IHF | 206-218 | 12.847 |
| H-NS | 88-102 | 12.752 |
| RcsB | 229-242 | 12.742 |
| CRP | 217-238 | 12.591 |
| DcuR | 268-322 | 12.303 |
| CpxR | 341-355 | 11.868 |
| GcvA | 207-235 | 11.862 |
| Nac | 285-299 | 11.824 |
| SoxS | 300-317 | 11.659 |
| MetR | 199-222 | 11.465 |
| Rob | 364-384 | 11.421 |
| IdnR | 204-219 | 11.292 |
| DeoR | 194-209 | 11.249 |
| Lrp | 380-391 | 11.103 |
| MelR | 232-249 | 11.023 |
| ModE | 329-355 | 10.849 |
| ArgR | 200-215 | 10.717 |
| TyrR | 210-231 | 10.521 |
| ArgP | 233-245 | 10.433 |
| Mlc | 217-239 | 10.332 |
| TorR | 369-378 | 10.275 |
| XylR | 368-385 | 10.201 |
| GlpR | 298-317 | 9.698 |
| UxuR | 234-251 | 9.034 |
| NarP | 241-247 | 8.509 |
| NarL | 179-185 | 8.439 |
| FruR | 120-137 | 8.288 |
| Ada | 266-293 | 8.262 |
| GntR | 8-27 | 8.046 |
| FhlA | 282-321 | 7.985 |
| GalR | 63-78 | 7.429 |
| GalS | 63-78 | 7.429 |
| DnaA | 368-376 | 7.218 |
| RhaS | 62-78 | 7.210 |
| PspF | 106-122 | 7.049 |
| Fur | 366-380 | 6.961 |
| MalT | 321-330 | 6.822 |
| FadR | 173-189 | 6.225 |
| NorR | 112-128 | 6.199 |
| MetJ | 238-245 | 6.156 |
| LacI | 61-81 | 6.029 |
| LexA | 53-72 | 5.366 |