| TF name | Position | PWM scan score |
| ArcA | 243-303 | 44.362 |
| CysB | 263-304 | 32.064 |
| DcuR | 263-317 | 22.654 |
| OmpR | 290-309 | 22.123 |
| CytR | 268-307 | 20.984 |
| Mlc | 139-161 | 20.768 |
| OxyR | 257-301 | 20.543 |
| TyrR | 273-294 | 18.147 |
| H-NS | 351-365 | 17.421 |
| GcvA | 264-292 | 17.315 |
| CRP | 256-277 | 17.053 |
| Fis | 271-291 | 17.038 |
| PhoB | 270-289 | 16.878 |
| Rob | 277-297 | 16.759 |
| PhoP | 257-273 | 16.729 |
| CpxR | 275-289 | 16.479 |
| NagC | 253-275 | 16.313 |
| FNR | 250-271 | 16.192 |
| NorR | 119-135 | 16.097 |
| DeoR | 275-290 | 15.850 |
| ArgR | 300-315 | 15.805 |
| IdnR | 286-301 | 15.566 |
| FruR | 163-180 | 15.566 |
| UlaR | 259-278 | 14.858 |
| Fur | 70-84 | 14.623 |
| RcsB | 278-291 | 14.507 |
| IHF | 259-271 | 14.268 |
| SoxS | 61-78 | 14.177 |
| GlpR | 345-364 | 14.140 |
| MelR | 344-361 | 13.860 |
| Nac | 158-172 | 13.409 |
| AraC | 236-253 | 13.393 |
| Ada | 278-305 | 13.369 |
| AgaR | 242-265 | 13.301 |
| MetR | 127-150 | 12.799 |
| GntR | 278-297 | 12.756 |
| GadE | 291-310 | 12.654 |
| MarA | 292-312 | 12.434 |
| FhlA | 238-277 | 11.544 |
| TorR | 198-207 | 11.212 |
| Lrp | 65-76 | 10.710 |
| ModE | 280-306 | 10.047 |
| XylR | 342-359 | 9.938 |
| UxuR | 23-40 | 9.850 |
| ArgP | 314-326 | 9.791 |
| NarP | 330-336 | 9.455 |
| NarL | 261-267 | 8.932 |
| FadR | 265-281 | 8.633 |
| DnaA | 328-336 | 8.280 |
| PurR | 275-290 | 8.268 |
| NtrC | 239-255 | 7.845 |
| MetJ | 59-66 | 7.485 |
| MalT | 80-89 | 7.440 |
| LacI | 132-152 | 7.100 |
| GalR | 275-290 | 6.746 |
| GalS | 275-290 | 6.746 |
| PspF | 210-226 | 6.223 |
| LexA | 132-151 | 5.379 |