| TF name | Position | PWM scan score |
| ArcA | 25-85 | 30.094 |
| CysB | 312-353 | 25.950 |
| GadE | 196-215 | 20.269 |
| Ada | 259-286 | 17.458 |
| H-NS | 49-63 | 17.421 |
| Mlc | 34-56 | 17.236 |
| MarA | 137-157 | 16.976 |
| Nac | 360-374 | 16.469 |
| PhoP | 148-164 | 16.055 |
| NagC | 68-90 | 15.330 |
| AgaR | 108-131 | 15.221 |
| Fur | 104-118 | 14.253 |
| GlpR | 43-62 | 14.140 |
| OxyR | 14-58 | 14.086 |
| OmpR | 108-127 | 13.905 |
| UlaR | 74-93 | 13.885 |
| MelR | 42-59 | 13.860 |
| DnaA | 281-289 | 13.779 |
| CytR | 59-98 | 13.547 |
| Rob | 34-54 | 13.539 |
| Fis | 6-26 | 13.009 |
| FNR | 262-283 | 12.989 |
| CpxR | 16-30 | 12.973 |
| DcuR | 65-119 | 12.545 |
| IHF | 200-212 | 12.539 |
| PspF | 327-343 | 12.495 |
| TyrR | 57-78 | 12.302 |
| CRP | 302-323 | 12.058 |
| FruR | 279-296 | 12.005 |
| SoxS | 325-342 | 11.916 |
| ModE | 110-136 | 11.844 |
| Lrp | 203-214 | 11.539 |
| RcsB | 201-214 | 11.343 |
| GcvA | 1-29 | 11.262 |
| DeoR | 194-209 | 11.235 |
| XylR | 271-288 | 10.907 |
| TorR | 361-370 | 10.214 |
| AraC | 161-178 | 9.980 |
| MetJ | 262-269 | 9.980 |
| ArgR | 134-149 | 9.948 |
| ArgP | 12-24 | 9.791 |
| PhoB | 151-170 | 9.651 |
| MetR | 47-70 | 9.633 |
| GntR | 302-321 | 9.603 |
| NarP | 28-34 | 9.455 |
| LacI | 111-131 | 9.128 |
| FadR | 207-223 | 8.725 |
| LexA | 143-162 | 8.270 |
| NarL | 353-359 | 8.154 |
| GalS | 186-201 | 7.730 |
| GalR | 186-201 | 7.730 |
| IdnR | 54-69 | 7.528 |
| NorR | 141-157 | 7.287 |
| UxuR | 351-368 | 7.060 |
| MalT | 272-281 | 6.059 |
| CueR | 120-138 | 5.822 |