| TF name | Position | PWM scan score |
| ArcA | 316-376 | 38.537 |
| OxyR | 258-302 | 34.786 |
| DcuR | 283-337 | 27.476 |
| CysB | 76-117 | 23.571 |
| NagC | 376-398 | 20.902 |
| AgaR | 83-106 | 19.220 |
| FNR | 370-391 | 18.808 |
| RcsB | 113-126 | 18.345 |
| Nac | 92-106 | 17.751 |
| OmpR | 287-306 | 16.869 |
| Mlc | 369-391 | 16.828 |
| CytR | 289-328 | 16.685 |
| PhoP | 347-363 | 16.400 |
| Fis | 16-36 | 16.374 |
| UxuR | 63-80 | 16.286 |
| GadE | 379-398 | 16.185 |
| CRP | 377-398 | 15.583 |
| GcvA | 272-300 | 15.543 |
| ArgP | 163-175 | 15.484 |
| TyrR | 240-261 | 15.062 |
| AraC | 238-255 | 15.037 |
| MetR | 254-277 | 14.648 |
| ModE | 148-174 | 14.143 |
| UlaR | 316-335 | 13.975 |
| MarA | 354-374 | 13.934 |
| Fur | 284-298 | 13.859 |
| CpxR | 69-83 | 13.719 |
| Ada | 359-386 | 13.517 |
| H-NS | 275-289 | 12.897 |
| XylR | 368-385 | 12.890 |
| PhoB | 317-336 | 12.740 |
| ArgR | 382-397 | 12.702 |
| IHF | 320-332 | 12.683 |
| Lrp | 379-390 | 11.522 |
| Rob | 275-295 | 11.022 |
| SoxS | 370-387 | 10.898 |
| GalR | 357-372 | 10.864 |
| GalS | 357-372 | 10.864 |
| GlpR | 369-388 | 10.620 |
| MelR | 367-384 | 10.417 |
| DeoR | 365-380 | 10.339 |
| NorR | 262-278 | 9.943 |
| GntR | 307-326 | 9.822 |
| TorR | 280-289 | 9.785 |
| PspF | 112-128 | 9.718 |
| NarL | 282-288 | 9.376 |
| FadR | 288-304 | 8.827 |
| MetJ | 79-86 | 8.430 |
| FruR | 126-143 | 8.394 |
| NarP | 272-278 | 8.306 |
| IdnR | 322-337 | 8.166 |
| LexA | 380-399 | 7.993 |
| TrpR | 120-137 | 7.937 |
| DnaA | 236-244 | 7.712 |
| FhlA | 128-167 | 5.051 |