| TF name | Position | PWM scan score |
| ArcA | 290-350 | 28.836 |
| CRP | 318-339 | 19.119 |
| GadE | 75-94 | 18.373 |
| CysB | 311-352 | 16.685 |
| OmpR | 123-142 | 15.416 |
| FruR | 130-147 | 14.697 |
| MarA | 70-90 | 14.437 |
| CytR | 212-251 | 14.416 |
| FNR | 303-324 | 14.145 |
| AgaR | 167-190 | 14.046 |
| TyrR | 67-88 | 13.711 |
| Nac | 69-83 | 13.313 |
| Mlc | 309-331 | 13.085 |
| CpxR | 10-24 | 13.053 |
| ModE | 129-155 | 13.033 |
| H-NS | 185-199 | 12.961 |
| NagC | 57-79 | 12.859 |
| PhoP | 119-135 | 12.113 |
| OxyR | 46-90 | 12.057 |
| ArgR | 79-94 | 11.924 |
| ArgP | 75-87 | 11.464 |
| GlpR | 69-88 | 11.346 |
| RcsB | 4-17 | 11.273 |
| Fis | 70-90 | 11.193 |
| Fur | 70-84 | 11.100 |
| GntR | 193-212 | 10.994 |
| UlaR | 232-251 | 10.974 |
| IHF | 285-297 | 10.948 |
| PhoB | 323-342 | 10.776 |
| UxuR | 114-131 | 10.733 |
| Rob | 370-390 | 10.676 |
| NorR | 320-336 | 10.403 |
| Lrp | 76-87 | 10.347 |
| DeoR | 313-328 | 10.284 |
| FadR | 83-99 | 10.161 |
| Ada | 108-135 | 10.065 |
| DnaA | 308-316 | 10.007 |
| SoxS | 97-114 | 9.883 |
| TorR | 309-318 | 9.754 |
| NarL | 78-84 | 9.376 |
| MelR | 282-299 | 8.992 |
| PspF | 318-334 | 8.909 |
| GalR | 380-395 | 8.776 |
| GalS | 380-395 | 8.776 |
| MalT | 270-279 | 8.754 |
| RhaS | 310-326 | 8.636 |
| GcvA | 367-395 | 8.403 |
| DcuR | 272-326 | 8.106 |
| TrpR | 366-383 | 7.874 |
| AraC | 310-327 | 7.507 |
| XylR | 69-86 | 7.057 |
| NarP | 373-379 | 6.879 |
| MetR | 247-270 | 6.662 |
| PurR | 285-300 | 5.967 |
| IdnR | 171-186 | 5.940 |
| CueR | 179-197 | 5.879 |
| MetJ | 67-74 | 5.813 |
| LacI | 35-55 | 5.149 |