| TF name | Position | PWM scan score |
| ArcA | 91-151 | 33.133 |
| CysB | 91-132 | 24.419 |
| OxyR | 110-154 | 22.713 |
| GcvA | 100-128 | 19.258 |
| NagC | 109-131 | 17.647 |
| FNR | 133-154 | 17.067 |
| GadE | 375-394 | 16.572 |
| OmpR | 357-376 | 16.035 |
| CpxR | 214-228 | 15.778 |
| TyrR | 13-34 | 14.977 |
| NorR | 105-121 | 14.939 |
| PspF | 115-131 | 14.825 |
| CytR | 209-248 | 14.573 |
| CRP | 170-191 | 14.537 |
| Fis | 108-128 | 14.406 |
| IHF | 173-185 | 14.063 |
| DeoR | 91-106 | 13.943 |
| AgaR | 156-179 | 13.890 |
| Fur | 173-187 | 13.800 |
| GalR | 174-189 | 13.538 |
| GalS | 174-189 | 13.538 |
| MetR | 113-136 | 13.387 |
| GntR | 371-390 | 13.052 |
| H-NS | 115-129 | 13.051 |
| GlpR | 126-145 | 12.608 |
| PurR | 174-189 | 12.424 |
| Lrp | 230-241 | 12.409 |
| FhlA | 130-169 | 12.267 |
| XylR | 126-143 | 12.178 |
| Nac | 60-74 | 11.627 |
| DcuR | 213-267 | 11.571 |
| IdnR | 108-123 | 11.443 |
| MelR | 95-112 | 11.292 |
| SoxS | 363-380 | 11.176 |
| PhoB | 279-298 | 11.160 |
| Mlc | 109-131 | 10.880 |
| TorR | 163-172 | 10.786 |
| Rob | 176-196 | 10.644 |
| ArgP | 18-30 | 10.282 |
| AraC | 272-289 | 10.239 |
| MarA | 174-194 | 10.053 |
| RcsB | 219-232 | 9.785 |
| UxuR | 150-167 | 9.467 |
| FruR | 228-245 | 9.353 |
| ArgR | 382-397 | 9.292 |
| PhoP | 154-170 | 8.619 |
| ModE | 149-175 | 8.567 |
| NarL | 371-377 | 8.154 |
| MetJ | 20-27 | 8.047 |
| UlaR | 212-231 | 7.812 |
| NarP | 308-314 | 7.776 |
| RhaS | 345-361 | 7.650 |
| TrpR | 106-123 | 7.625 |
| DnaA | 135-143 | 7.532 |
| NtrC | 311-327 | 7.406 |
| Ada | 114-141 | 7.275 |
| FadR | 215-231 | 6.526 |
| LacI | 277-297 | 6.395 |
| MalT | 272-281 | 5.463 |