| TF name | Position | PWM scan score |
| ArcA | 322-382 | 31.225 |
| FNR | 357-378 | 19.648 |
| CRP | 354-375 | 18.105 |
| OxyR | 349-393 | 17.114 |
| CysB | 349-390 | 16.742 |
| AgaR | 347-370 | 16.054 |
| IHF | 349-361 | 16.037 |
| MarA | 342-362 | 15.491 |
| UlaR | 349-368 | 15.486 |
| Mlc | 90-112 | 15.370 |
| NagC | 92-114 | 15.271 |
| AraC | 349-366 | 15.161 |
| CpxR | 355-369 | 15.124 |
| H-NS | 357-371 | 14.389 |
| ModE | 346-372 | 14.357 |
| DcuR | 326-380 | 13.794 |
| XylR | 356-373 | 13.622 |
| ArgR | 345-360 | 13.115 |
| Fis | 128-148 | 13.085 |
| OmpR | 345-364 | 12.980 |
| Rob | 314-334 | 12.683 |
| Nac | 96-110 | 12.271 |
| SoxS | 369-386 | 11.920 |
| CytR | 359-398 | 11.795 |
| Lrp | 360-371 | 11.576 |
| LacI | 358-378 | 11.297 |
| FruR | 20-37 | 11.031 |
| RcsB | 355-368 | 10.499 |
| UxuR | 350-367 | 10.468 |
| GntR | 89-108 | 10.399 |
| Fur | 343-357 | 10.359 |
| GlpR | 356-375 | 10.155 |
| FadR | 106-122 | 9.968 |
| PhoB | 326-345 | 9.779 |
| TyrR | 356-377 | 9.704 |
| GadE | 22-41 | 9.556 |
| TorR | 88-97 | 9.517 |
| ArgP | 348-360 | 9.493 |
| PspF | 67-83 | 9.275 |
| PhoP | 354-370 | 8.953 |
| NarL | 269-275 | 8.792 |
| NarP | 16-22 | 8.660 |
| NtrC | 150-166 | 8.601 |
| MetR | 347-370 | 8.507 |
| Ada | 342-369 | 8.286 |
| DeoR | 364-379 | 7.614 |
| GcvA | 340-368 | 7.471 |
| MetJ | 20-27 | 7.224 |
| DnaA | 87-95 | 7.045 |
| MelR | 29-46 | 6.932 |
| GalS | 4-19 | 6.873 |
| GalR | 4-19 | 6.873 |
| IdnR | 41-56 | 6.101 |
| NorR | 81-97 | 5.991 |
| MalT | 139-148 | 5.772 |
| PurR | 84-99 | 5.158 |
| FhlA | 89-128 | 5.095 |