| TF name | Position | PWM scan score |
| ArcA | 336-396 | 28.847 |
| PhoP | 338-354 | 19.323 |
| CysB | 251-292 | 18.675 |
| GadE | 332-351 | 16.879 |
| OmpR | 269-288 | 16.248 |
| GntR | 135-154 | 15.746 |
| RcsB | 323-336 | 15.032 |
| FadR | 220-236 | 14.224 |
| CRP | 325-346 | 14.096 |
| FNR | 327-348 | 13.999 |
| DeoR | 278-293 | 13.720 |
| Mlc | 326-348 | 13.537 |
| NagC | 269-291 | 12.914 |
| PhoB | 360-379 | 12.903 |
| Fis | 3-23 | 12.857 |
| Lrp | 198-209 | 12.645 |
| AgaR | 281-304 | 12.515 |
| AraC | 144-161 | 12.222 |
| IHF | 279-291 | 12.082 |
| Rob | 331-351 | 11.979 |
| CytR | 314-353 | 11.839 |
| H-NS | 97-111 | 11.374 |
| TorR | 73-82 | 11.105 |
| OxyR | 248-292 | 11.072 |
| ArgR | 363-378 | 11.019 |
| Ada | 150-177 | 10.948 |
| GcvA | 319-347 | 10.921 |
| Nac | 324-338 | 10.911 |
| CpxR | 323-337 | 10.610 |
| SoxS | 347-364 | 10.589 |
| UlaR | 294-313 | 10.562 |
| ArgP | 302-314 | 10.485 |
| XylR | 251-268 | 10.485 |
| ModE | 258-284 | 10.444 |
| MarA | 100-120 | 10.373 |
| PspF | 14-30 | 10.084 |
| GlpR | 352-371 | 9.737 |
| FruR | 243-260 | 9.680 |
| UxuR | 248-265 | 9.662 |
| DcuR | 315-369 | 9.640 |
| NarP | 271-277 | 9.543 |
| MelR | 190-207 | 9.459 |
| Fur | 60-74 | 9.235 |
| LacI | 283-303 | 8.638 |
| MetJ | 89-96 | 8.580 |
| TyrR | 252-273 | 8.207 |
| IdnR | 143-158 | 7.689 |
| NarL | 33-39 | 7.680 |
| NorR | 319-335 | 7.549 |
| MetR | 66-89 | 7.316 |
| DnaA | 25-33 | 7.165 |
| MalT | 237-246 | 6.427 |
| FhlA | 211-250 | 6.252 |
| GalS | 22-37 | 5.033 |
| GalR | 22-37 | 5.033 |