| TF name | Position | PWM scan score |
| ArcA | 87-147 | 30.741 |
| OmpR | 94-113 | 24.031 |
| ArgR | 100-115 | 20.238 |
| CysB | 71-112 | 18.745 |
| RcsB | 105-118 | 17.199 |
| DcuR | 99-153 | 15.976 |
| Fis | 98-118 | 15.219 |
| FNR | 295-316 | 15.209 |
| NagC | 88-110 | 15.084 |
| Rob | 10-30 | 15.016 |
| XylR | 125-142 | 14.919 |
| ModE | 301-327 | 14.904 |
| UlaR | 94-113 | 14.765 |
| H-NS | 96-110 | 14.702 |
| CRP | 58-79 | 14.635 |
| DeoR | 166-181 | 14.108 |
| AgaR | 74-97 | 14.103 |
| GlpR | 60-79 | 13.819 |
| PhoP | 92-108 | 13.808 |
| GalS | 77-92 | 13.223 |
| GalR | 77-92 | 13.223 |
| CytR | 288-327 | 13.201 |
| OxyR | 68-112 | 13.153 |
| AraC | 369-386 | 12.947 |
| DnaA | 44-52 | 12.771 |
| TyrR | 105-126 | 12.630 |
| IHF | 132-144 | 12.459 |
| Fur | 98-112 | 11.895 |
| PhoB | 132-151 | 11.295 |
| Ada | 124-151 | 10.938 |
| Lrp | 316-327 | 10.762 |
| MarA | 82-102 | 10.617 |
| Nac | 365-379 | 10.453 |
| Mlc | 42-64 | 9.982 |
| IdnR | 132-147 | 9.932 |
| GntR | 73-92 | 9.822 |
| NarP | 325-331 | 9.746 |
| MetJ | 369-376 | 9.682 |
| NarL | 320-326 | 9.376 |
| SoxS | 309-326 | 9.319 |
| MetR | 271-294 | 9.300 |
| TorR | 318-327 | 9.198 |
| MalT | 1-10 | 8.866 |
| ArgP | 41-53 | 8.855 |
| GadE | 57-76 | 8.642 |
| GcvA | 72-100 | 8.246 |
| NorR | 18-34 | 7.915 |
| PspF | 95-111 | 7.593 |
| MelR | 32-49 | 7.372 |
| FruR | 8-25 | 7.214 |
| FhlA | 117-156 | 6.476 |
| PurR | 357-372 | 6.433 |
| RhaS | 322-338 | 6.369 |
| LacI | 221-241 | 6.294 |
| NtrC | 67-83 | 6.291 |
| UxuR | 301-318 | 6.281 |
| CpxR | 187-201 | 6.051 |
| LexA | 38-57 | 5.299 |