| TF name | Position | PWM scan score |
| ArcA | 44-104 | 20.234 |
| H-NS | 64-78 | 17.028 |
| GcvA | 61-89 | 16.757 |
| LexA | 69-88 | 14.235 |
| OmpR | 65-84 | 14.062 |
| IHF | 61-73 | 14.049 |
| SoxS | 359-376 | 13.871 |
| PhoB | 65-84 | 13.373 |
| CpxR | 61-75 | 13.257 |
| FNR | 55-76 | 13.238 |
| MarA | 338-358 | 13.085 |
| DeoR | 62-77 | 12.582 |
| GadE | 69-88 | 12.061 |
| MelR | 76-93 | 11.892 |
| OxyR | 50-94 | 11.713 |
| ModE | 353-379 | 11.654 |
| GntR | 62-81 | 11.426 |
| CysB | 59-100 | 10.924 |
| Fis | 65-85 | 10.812 |
| AraC | 86-103 | 10.681 |
| Mlc | 58-80 | 10.264 |
| CRP | 47-68 | 10.084 |
| NagC | 65-87 | 9.933 |
| Lrp | 61-72 | 9.915 |
| MetJ | 86-93 | 9.765 |
| UlaR | 164-183 | 9.558 |
| TorR | 19-28 | 9.479 |
| Rob | 53-73 | 9.106 |
| IdnR | 9-24 | 8.955 |
| PhoP | 370-386 | 8.771 |
| Nac | 63-77 | 8.658 |
| MetR | 7-30 | 8.622 |
| CueR | 329-347 | 8.410 |
| TyrR | 58-79 | 8.333 |
| XylR | 63-80 | 8.296 |
| NarL | 347-353 | 8.154 |
| DcuR | 48-102 | 7.898 |
| ArgR | 347-362 | 7.894 |
| RcsB | 64-77 | 7.881 |
| CytR | 67-106 | 7.745 |
| DnaA | 27-35 | 7.425 |
| NarP | 122-128 | 7.325 |
| GlpR | 68-87 | 7.001 |
| AgaR | 58-81 | 6.551 |
| GalS | 12-27 | 6.224 |
| GalR | 12-27 | 6.224 |
| UxuR | 54-71 | 6.076 |
| RhaS | 116-132 | 5.850 |
| LacI | 3-23 | 5.777 |
| ArgP | 282-294 | 5.744 |
| PspF | 345-361 | 5.696 |
| PurR | 377-392 | 5.283 |
| Fur | 348-362 | 5.198 |
| MalT | 113-122 | 5.134 |