| TF name | Position | PWM scan score |
| ArcA | 337-397 | 38.666 |
| OxyR | 336-380 | 22.416 |
| CysB | 358-399 | 21.996 |
| NagC | 376-398 | 19.522 |
| OmpR | 376-395 | 18.593 |
| Fis | 190-210 | 17.903 |
| PhoP | 380-396 | 17.743 |
| FNR | 216-237 | 17.512 |
| AgaR | 362-385 | 16.416 |
| TyrR | 368-389 | 16.397 |
| CRP | 213-234 | 16.355 |
| GcvA | 367-395 | 16.033 |
| Mlc | 354-376 | 15.964 |
| Fur | 201-215 | 15.715 |
| ArgP | 98-110 | 15.059 |
| CpxR | 349-363 | 14.830 |
| IHF | 222-234 | 14.616 |
| SoxS | 192-209 | 14.437 |
| Rob | 370-390 | 14.142 |
| DeoR | 347-362 | 13.908 |
| ArgR | 193-208 | 13.837 |
| PspF | 127-143 | 13.821 |
| H-NS | 351-365 | 13.670 |
| CytR | 340-379 | 13.532 |
| Ada | 349-376 | 12.993 |
| MarA | 190-210 | 12.977 |
| Nac | 378-392 | 12.333 |
| DcuR | 324-378 | 12.286 |
| PhoB | 342-361 | 12.108 |
| UlaR | 350-369 | 11.613 |
| RcsB | 208-221 | 11.517 |
| FhlA | 137-176 | 11.231 |
| Lrp | 346-357 | 10.984 |
| XylR | 137-154 | 10.803 |
| GalS | 299-314 | 10.659 |
| GalR | 299-314 | 10.659 |
| MelR | 28-45 | 10.439 |
| LacI | 363-383 | 10.414 |
| IdnR | 162-177 | 10.130 |
| GadE | 36-55 | 9.998 |
| AraC | 371-388 | 9.495 |
| TorR | 246-255 | 9.359 |
| NorR | 48-64 | 8.704 |
| ModE | 190-216 | 8.651 |
| CueR | 310-328 | 8.575 |
| MetR | 342-365 | 8.493 |
| RhaS | 176-192 | 8.406 |
| UxuR | 128-145 | 8.131 |
| NtrC | 46-62 | 7.644 |
| FadR | 269-285 | 7.493 |
| NarL | 254-260 | 7.395 |
| LexA | 315-334 | 6.627 |
| NarP | 106-112 | 6.539 |
| GlpR | 143-162 | 6.536 |
| GntR | 140-159 | 6.533 |
| PurR | 299-314 | 6.355 |
| DnaA | 178-186 | 6.313 |
| MalT | 312-321 | 5.156 |