| TF name | Position | PWM scan score |
| ArcA | 319-379 | 28.207 |
| Fis | 69-89 | 18.709 |
| ArgR | 75-90 | 17.620 |
| CysB | 245-286 | 16.940 |
| OxyR | 243-287 | 16.828 |
| H-NS | 301-315 | 16.209 |
| CytR | 346-385 | 16.087 |
| DeoR | 299-314 | 15.924 |
| GcvA | 337-365 | 15.819 |
| MetR | 231-254 | 14.550 |
| Rob | 239-259 | 14.472 |
| UxuR | 159-176 | 14.124 |
| CpxR | 342-356 | 13.972 |
| OmpR | 341-360 | 13.610 |
| DcuR | 238-292 | 13.576 |
| IHF | 278-290 | 13.557 |
| PhoP | 362-378 | 13.413 |
| AgaR | 241-264 | 13.132 |
| PhoB | 359-378 | 13.026 |
| Ada | 239-266 | 12.993 |
| Fur | 242-256 | 12.867 |
| Nac | 133-147 | 12.765 |
| SoxS | 242-259 | 12.714 |
| FNR | 107-128 | 12.667 |
| FadR | 58-74 | 12.506 |
| DnaA | 259-267 | 12.481 |
| CRP | 349-370 | 12.159 |
| Mlc | 337-359 | 12.050 |
| NagC | 343-365 | 11.949 |
| ModE | 28-54 | 11.815 |
| PspF | 94-110 | 11.763 |
| ArgP | 240-252 | 11.751 |
| MarA | 232-252 | 11.533 |
| UlaR | 332-351 | 11.492 |
| GadE | 301-320 | 11.302 |
| GlpR | 368-387 | 11.207 |
| MalT | 91-100 | 11.172 |
| AraC | 189-206 | 10.998 |
| RcsB | 276-289 | 10.766 |
| IdnR | 351-366 | 10.731 |
| Lrp | 366-377 | 10.330 |
| LexA | 73-92 | 10.100 |
| MetJ | 141-148 | 9.765 |
| GntR | 342-361 | 9.751 |
| TyrR | 101-122 | 9.236 |
| TorR | 27-36 | 9.082 |
| FruR | 245-262 | 8.832 |
| PurR | 353-368 | 8.662 |
| NorR | 182-198 | 8.620 |
| NarL | 243-249 | 8.290 |
| MelR | 312-329 | 8.194 |
| CueR | 286-304 | 7.608 |
| NarP | 167-173 | 7.423 |
| XylR | 339-356 | 7.341 |
| FhlA | 62-101 | 6.308 |
| NtrC | 13-29 | 5.866 |
| RhaS | 204-220 | 5.740 |
| CaiF | 350-394 | 5.365 |