| TF name | Position | PWM scan score |
| ArcA | 122-182 | 30.815 |
| Mlc | 155-177 | 23.555 |
| OmpR | 279-298 | 18.887 |
| AgaR | 146-169 | 18.885 |
| NagC | 157-179 | 18.413 |
| PspF | 51-67 | 17.776 |
| PhoB | 146-165 | 16.551 |
| UlaR | 145-164 | 15.798 |
| OxyR | 310-354 | 14.997 |
| Fis | 139-159 | 14.858 |
| ArgR | 325-340 | 14.793 |
| GcvA | 237-265 | 14.745 |
| TyrR | 154-175 | 14.559 |
| IHF | 153-165 | 14.190 |
| CRP | 300-321 | 13.793 |
| FNR | 157-178 | 13.720 |
| CysB | 115-156 | 13.669 |
| PhoP | 144-160 | 13.610 |
| SoxS | 120-137 | 13.158 |
| H-NS | 133-147 | 12.936 |
| CytR | 297-336 | 12.934 |
| ArgP | 278-290 | 12.871 |
| GntR | 159-178 | 12.822 |
| RcsB | 347-360 | 12.667 |
| ModE | 147-173 | 12.539 |
| CpxR | 156-170 | 12.461 |
| Nac | 110-124 | 12.301 |
| MarA | 270-290 | 12.239 |
| LexA | 127-146 | 12.081 |
| DcuR | 112-166 | 12.011 |
| GadE | 137-156 | 11.517 |
| GlpR | 108-127 | 11.405 |
| XylR | 290-307 | 11.394 |
| Ada | 137-164 | 11.086 |
| GalR | 265-280 | 11.013 |
| GalS | 265-280 | 11.013 |
| Lrp | 279-290 | 10.780 |
| NtrC | 104-120 | 10.067 |
| MelR | 317-334 | 9.948 |
| LacI | 154-174 | 9.917 |
| Rob | 125-145 | 9.909 |
| DeoR | 135-150 | 9.901 |
| Fur | 147-161 | 9.560 |
| UxuR | 111-128 | 8.853 |
| AraC | 126-143 | 8.773 |
| MetR | 143-166 | 8.724 |
| NarL | 365-371 | 8.685 |
| IdnR | 140-155 | 8.411 |
| RhaS | 126-142 | 8.282 |
| MetJ | 340-347 | 7.485 |
| NorR | 127-143 | 7.371 |
| FadR | 361-377 | 7.113 |
| DnaA | 65-73 | 7.045 |
| TorR | 161-170 | 7.016 |
| FruR | 377-394 | 6.954 |
| NarP | 153-159 | 6.591 |