| TF name | Position | PWM scan score |
| CRP | 77-98 | 20.034 |
| FNR | 80-101 | 19.195 |
| OxyR | 57-101 | 18.571 |
| ArcA | 172-232 | 17.295 |
| GntR | 349-368 | 17.072 |
| Nac | 78-92 | 16.090 |
| Fur | 80-94 | 13.761 |
| MetJ | 349-356 | 13.753 |
| GlpR | 79-98 | 13.694 |
| UlaR | 239-258 | 13.567 |
| MetR | 319-342 | 13.387 |
| NagC | 77-99 | 13.016 |
| RcsB | 83-96 | 12.930 |
| MarA | 209-229 | 12.919 |
| H-NS | 85-99 | 12.693 |
| Fis | 38-58 | 12.446 |
| ArgP | 81-93 | 12.295 |
| OmpR | 82-101 | 12.175 |
| Rob | 271-291 | 12.111 |
| PhoB | 96-115 | 11.919 |
| TyrR | 86-107 | 11.451 |
| ArgR | 223-238 | 11.117 |
| AgaR | 67-90 | 11.020 |
| IHF | 346-358 | 11.019 |
| GadE | 78-97 | 10.972 |
| Lrp | 74-85 | 10.737 |
| CpxR | 346-360 | 10.724 |
| DeoR | 83-98 | 10.720 |
| SoxS | 127-144 | 10.703 |
| NarL | 200-206 | 10.130 |
| Mlc | 79-101 | 9.922 |
| RhaS | 263-279 | 9.807 |
| CysB | 59-100 | 9.589 |
| NarP | 366-372 | 9.521 |
| PhoP | 323-339 | 9.200 |
| FadR | 59-75 | 9.162 |
| ModE | 50-76 | 9.024 |
| NorR | 370-386 | 8.959 |
| GcvA | 73-101 | 8.894 |
| AraC | 206-223 | 8.791 |
| IdnR | 70-85 | 8.767 |
| CueR | 190-208 | 8.434 |
| MelR | 233-250 | 8.356 |
| PspF | 351-367 | 8.281 |
| MalT | 287-296 | 8.210 |
| FhlA | 312-351 | 8.139 |
| LacI | 181-201 | 7.993 |
| Ada | 233-260 | 7.889 |
| XylR | 234-251 | 7.113 |
| UxuR | 199-216 | 7.070 |
| CytR | 85-124 | 6.648 |
| DcuR | 192-246 | 6.632 |
| GalR | 182-197 | 6.115 |
| GalS | 182-197 | 6.115 |
| PurR | 59-74 | 5.187 |