| TF name | Position | PWM scan score |
| ArcA | 122-182 | 22.817 |
| GadE | 109-128 | 19.379 |
| Nac | 141-155 | 17.187 |
| FNR | 131-152 | 16.969 |
| GntR | 314-333 | 16.604 |
| Ada | 125-152 | 16.384 |
| CytR | 136-175 | 16.291 |
| UlaR | 134-153 | 16.178 |
| OmpR | 346-365 | 15.692 |
| Fis | 131-151 | 15.633 |
| OxyR | 32-76 | 15.135 |
| AraC | 131-148 | 15.126 |
| CysB | 333-374 | 15.005 |
| Fur | 131-145 | 14.769 |
| CRP | 122-143 | 14.507 |
| IHF | 137-149 | 13.306 |
| NagC | 202-224 | 13.237 |
| Lrp | 134-145 | 12.833 |
| GcvA | 52-80 | 12.559 |
| MetR | 110-133 | 12.496 |
| XylR | 24-41 | 12.259 |
| PhoP | 132-148 | 12.256 |
| NorR | 124-140 | 11.914 |
| RcsB | 137-150 | 11.608 |
| ModE | 160-186 | 11.317 |
| FruR | 51-68 | 11.316 |
| MarA | 245-265 | 10.932 |
| PspF | 159-175 | 10.883 |
| SoxS | 16-33 | 10.517 |
| H-NS | 136-150 | 10.314 |
| MetJ | 205-212 | 10.171 |
| ArgR | 133-148 | 9.974 |
| GlpR | 139-158 | 9.747 |
| NarP | 283-289 | 9.746 |
| NarL | 136-142 | 9.580 |
| ArgP | 54-66 | 9.545 |
| AgaR | 130-153 | 9.450 |
| IdnR | 73-88 | 9.358 |
| UxuR | 109-126 | 9.306 |
| Mlc | 121-143 | 9.288 |
| Rob | 53-73 | 8.956 |
| TorR | 202-211 | 8.848 |
| TyrR | 211-232 | 8.083 |
| RhaS | 152-168 | 7.703 |
| LacI | 240-260 | 7.647 |
| NtrC | 355-371 | 7.620 |
| LexA | 271-290 | 7.386 |
| CpxR | 28-42 | 7.377 |
| MelR | 336-353 | 6.741 |
| DnaA | 288-296 | 6.417 |
| DeoR | 327-342 | 6.328 |
| PhoB | 178-197 | 6.186 |
| FadR | 206-222 | 5.478 |
| DcuR | 90-144 | 5.440 |
| GalR | 51-66 | 5.046 |
| GalS | 51-66 | 5.046 |