| TF name | Position | PWM scan score |
| CysB | 92-133 | 27.545 |
| ArcA | 9-69 | 22.319 |
| TyrR | 1-22 | 18.331 |
| OmpR | 326-345 | 17.699 |
| FNR | 22-43 | 16.939 |
| GadE | 93-112 | 16.090 |
| DnaA | 342-350 | 15.414 |
| Rob | 40-60 | 14.610 |
| CytR | 69-108 | 14.581 |
| DeoR | 93-108 | 13.838 |
| AgaR | 29-52 | 13.619 |
| RcsB | 28-41 | 13.571 |
| Mlc | 8-30 | 13.009 |
| DcuR | 321-375 | 12.968 |
| IHF | 100-112 | 12.736 |
| Nac | 285-299 | 12.577 |
| H-NS | 54-68 | 12.446 |
| MarA | 117-137 | 12.379 |
| AraC | 22-39 | 12.366 |
| GalS | 77-92 | 12.173 |
| GalR | 77-92 | 12.173 |
| GlpR | 90-109 | 12.141 |
| ArgR | 336-351 | 11.990 |
| CRP | 82-103 | 11.949 |
| PhoB | 16-35 | 11.836 |
| Fis | 329-349 | 11.763 |
| NorR | 369-385 | 11.736 |
| Ada | 51-78 | 11.579 |
| Lrp | 93-104 | 11.487 |
| SoxS | 345-362 | 11.379 |
| IdnR | 14-29 | 11.342 |
| TorR | 207-216 | 10.851 |
| NarL | 27-33 | 10.241 |
| LexA | 334-353 | 10.109 |
| Fur | 100-114 | 9.733 |
| UxuR | 340-357 | 9.373 |
| UlaR | 179-198 | 9.248 |
| ModE | 329-355 | 9.178 |
| LacI | 338-358 | 9.175 |
| OxyR | 178-222 | 9.104 |
| CpxR | 93-107 | 9.064 |
| PhoP | 12-28 | 8.981 |
| ArgP | 99-111 | 8.471 |
| NagC | 195-217 | 8.320 |
| PurR | 324-339 | 8.206 |
| MelR | 305-322 | 7.542 |
| NtrC | 90-106 | 7.207 |
| PspF | 52-68 | 7.143 |
| NarP | 367-373 | 6.860 |
| GntR | 196-215 | 6.735 |
| MetJ | 37-44 | 6.590 |
| GcvA | 93-121 | 6.466 |
| MetR | 72-95 | 6.145 |
| XylR | 89-106 | 6.064 |
| MalT | 226-235 | 5.439 |