| TF name | Position | PWM scan score |
| ArcA | 154-214 | 24.126 |
| GntR | 22-41 | 18.439 |
| RcsB | 281-294 | 17.030 |
| OmpR | 270-289 | 15.784 |
| NagC | 197-219 | 15.588 |
| CysB | 180-221 | 15.544 |
| Fur | 275-289 | 14.407 |
| CRP | 153-174 | 14.218 |
| CytR | 251-290 | 13.980 |
| NtrC | 92-108 | 13.888 |
| ModE | 275-301 | 13.861 |
| OxyR | 235-279 | 13.839 |
| H-NS | 272-286 | 13.212 |
| GcvA | 144-172 | 13.118 |
| Fis | 160-180 | 12.618 |
| Rob | 375-395 | 12.167 |
| MetR | 65-88 | 12.078 |
| PhoB | 270-289 | 11.678 |
| AgaR | 312-335 | 11.460 |
| SoxS | 83-100 | 11.278 |
| IHF | 171-183 | 10.982 |
| UlaR | 184-203 | 10.869 |
| TorR | 30-39 | 10.851 |
| AraC | 108-125 | 10.733 |
| FNR | 155-176 | 10.624 |
| UxuR | 24-41 | 10.276 |
| ArgR | 270-285 | 10.196 |
| MelR | 305-322 | 10.032 |
| IdnR | 281-296 | 10.026 |
| DeoR | 173-188 | 9.802 |
| MarA | 211-231 | 9.622 |
| NarL | 283-289 | 9.444 |
| DnaA | 29-37 | 9.223 |
| XylR | 18-35 | 9.159 |
| Lrp | 281-292 | 9.116 |
| Nac | 65-79 | 9.034 |
| GadE | 154-173 | 8.944 |
| FruR | 337-354 | 8.904 |
| GlpR | 161-180 | 8.761 |
| ArgP | 279-291 | 8.726 |
| Mlc | 375-397 | 8.511 |
| NarP | 249-255 | 8.509 |
| MetJ | 139-146 | 8.201 |
| PhoP | 268-284 | 7.789 |
| PspF | 271-287 | 7.687 |
| FadR | 287-303 | 7.582 |
| CpxR | 173-187 | 7.440 |
| GalS | 48-63 | 7.099 |
| GalR | 48-63 | 7.099 |
| TyrR | 202-223 | 6.966 |
| RhaS | 126-142 | 6.446 |
| MalT | 256-265 | 6.202 |
| PurR | 72-87 | 6.157 |
| FhlA | 257-296 | 5.952 |
| LacI | 169-189 | 5.928 |
| NorR | 21-37 | 5.568 |
| CueR | 134-152 | 5.315 |