| TF name | Position | PWM scan score |
| ArcA | 312-372 | 23.350 |
| UlaR | 345-364 | 19.107 |
| RcsB | 34-47 | 16.568 |
| DcuR | 337-391 | 16.231 |
| MelR | 300-317 | 15.144 |
| Fur | 154-168 | 14.803 |
| SoxS | 344-361 | 14.708 |
| CytR | 335-374 | 14.663 |
| AgaR | 340-363 | 14.314 |
| Nac | 281-295 | 14.257 |
| Fis | 347-367 | 13.724 |
| H-NS | 344-358 | 13.458 |
| AraC | 67-84 | 13.054 |
| PhoB | 335-354 | 12.619 |
| OmpR | 343-362 | 11.945 |
| MetJ | 274-281 | 11.889 |
| GadE | 141-160 | 11.883 |
| OxyR | 332-376 | 11.883 |
| NagC | 311-333 | 11.653 |
| PhoP | 340-356 | 11.476 |
| IHF | 342-354 | 11.456 |
| GntR | 115-134 | 11.430 |
| CysB | 243-284 | 10.982 |
| GcvA | 340-368 | 10.759 |
| FNR | 243-264 | 10.684 |
| IdnR | 42-57 | 10.590 |
| Lrp | 350-361 | 10.496 |
| PurR | 68-83 | 10.370 |
| ModE | 123-149 | 10.269 |
| CRP | 339-360 | 9.978 |
| Ada | 204-231 | 9.434 |
| DnaA | 122-130 | 9.223 |
| XylR | 130-147 | 8.768 |
| GalR | 68-83 | 8.765 |
| GalS | 68-83 | 8.765 |
| ArgR | 130-145 | 8.701 |
| MarA | 338-358 | 8.561 |
| CpxR | 355-369 | 8.516 |
| UxuR | 128-145 | 8.396 |
| NarL | 352-358 | 8.131 |
| Mlc | 309-331 | 8.046 |
| GlpR | 327-346 | 8.029 |
| ArgP | 345-357 | 7.979 |
| NarP | 94-100 | 7.762 |
| TorR | 209-218 | 7.719 |
| FhlA | 306-345 | 7.133 |
| NorR | 159-175 | 6.904 |
| TyrR | 231-252 | 6.658 |
| DeoR | 244-259 | 6.530 |
| FadR | 12-28 | 6.497 |
| MetR | 101-124 | 6.388 |
| PspF | 323-339 | 6.260 |
| Rob | 288-308 | 5.754 |
| NtrC | 135-151 | 5.181 |