| TF name | Position | PWM scan score |
| ArcA | 9-69 | 23.350 |
| UlaR | 42-61 | 19.107 |
| OxyR | 131-175 | 18.727 |
| DcuR | 34-88 | 16.231 |
| NorR | 218-234 | 15.758 |
| Rob | 216-236 | 15.497 |
| MetR | 133-156 | 15.211 |
| SoxS | 41-58 | 14.708 |
| CytR | 32-71 | 14.663 |
| Fur | 44-58 | 14.425 |
| Fis | 327-347 | 14.404 |
| AgaR | 37-60 | 14.314 |
| RcsB | 42-55 | 14.181 |
| H-NS | 41-55 | 13.458 |
| PhoB | 32-51 | 12.619 |
| CRP | 192-213 | 12.055 |
| FNR | 273-294 | 12.054 |
| OmpR | 40-59 | 11.945 |
| NagC | 8-30 | 11.653 |
| AraC | 273-290 | 11.628 |
| Ada | 279-306 | 11.495 |
| PhoP | 37-53 | 11.476 |
| IHF | 39-51 | 11.456 |
| Nac | 46-60 | 11.378 |
| ArgR | 341-356 | 11.304 |
| GntR | 6-25 | 11.214 |
| ModE | 241-267 | 11.207 |
| DnaA | 130-138 | 11.099 |
| NtrC | 276-292 | 10.828 |
| GcvA | 37-65 | 10.759 |
| CysB | 192-233 | 10.610 |
| Lrp | 336-347 | 10.515 |
| GadE | 130-149 | 10.428 |
| DeoR | 323-338 | 10.055 |
| MarA | 330-350 | 9.703 |
| TorR | 276-285 | 9.592 |
| NarL | 212-218 | 8.545 |
| CpxR | 52-66 | 8.516 |
| MelR | 328-345 | 8.430 |
| IdnR | 274-289 | 8.411 |
| Mlc | 6-28 | 8.046 |
| GlpR | 24-43 | 8.029 |
| FhlA | 125-164 | 8.001 |
| ArgP | 42-54 | 7.979 |
| MetJ | 40-47 | 7.710 |
| LexA | 130-149 | 7.431 |
| FadR | 353-369 | 7.328 |
| XylR | 207-224 | 7.301 |
| MalT | 183-192 | 7.249 |
| PspF | 342-358 | 6.871 |
| FruR | 330-347 | 6.778 |
| TyrR | 160-181 | 6.232 |
| UxuR | 44-61 | 5.727 |
| NarP | 63-69 | 5.349 |
| RhaS | 82-98 | 5.141 |