| TF name | Position | PWM scan score |
| ArcA | 332-392 | 26.532 |
| ModE | 344-370 | 20.383 |
| AraC | 248-265 | 18.612 |
| CysB | 347-388 | 16.483 |
| OmpR | 242-261 | 15.650 |
| AgaR | 301-324 | 14.937 |
| Fis | 6-26 | 14.404 |
| CRP | 245-266 | 13.854 |
| PhoB | 302-321 | 13.639 |
| IHF | 248-260 | 13.534 |
| CpxR | 351-365 | 13.202 |
| SoxS | 19-36 | 12.358 |
| UlaR | 205-224 | 12.322 |
| Nac | 243-257 | 12.222 |
| DnaA | 351-359 | 12.065 |
| NagC | 242-264 | 11.364 |
| OxyR | 310-354 | 11.314 |
| ArgR | 20-35 | 11.304 |
| H-NS | 250-264 | 11.294 |
| DcuR | 327-381 | 11.161 |
| GadE | 244-263 | 11.123 |
| PhoP | 18-34 | 10.889 |
| FhlA | 75-114 | 10.814 |
| FruR | 257-274 | 10.798 |
| Lrp | 251-262 | 10.762 |
| TyrR | 349-370 | 10.619 |
| MetR | 246-269 | 10.458 |
| UxuR | 360-377 | 10.451 |
| FNR | 344-365 | 10.333 |
| GcvA | 341-369 | 10.308 |
| RcsB | 254-267 | 10.281 |
| DeoR | 2-17 | 10.055 |
| GlpR | 247-266 | 9.933 |
| Rob | 19-39 | 9.842 |
| TorR | 81-90 | 9.829 |
| ArgP | 348-360 | 9.793 |
| NorR | 346-362 | 9.765 |
| MarA | 9-29 | 9.703 |
| XylR | 342-359 | 9.686 |
| NarL | 249-255 | 9.129 |
| NtrC | 239-255 | 8.997 |
| IdnR | 247-262 | 8.945 |
| CytR | 346-385 | 8.773 |
| LexA | 76-95 | 8.447 |
| MelR | 7-24 | 8.430 |
| Ada | 202-229 | 8.282 |
| Mlc | 348-370 | 7.665 |
| FadR | 32-48 | 7.328 |
| PspF | 21-37 | 6.871 |
| NarP | 260-266 | 6.860 |
| GntR | 259-278 | 6.772 |
| Fur | 248-262 | 6.756 |
| TrpR | 358-375 | 6.329 |
| MetJ | 361-368 | 5.744 |
| GalR | 256-271 | 5.020 |
| GalS | 256-271 | 5.020 |
| MalT | 198-207 | 5.017 |