| TF name | Position | PWM scan score |
| ArcA | 339-399 | 26.345 |
| OxyR | 4-48 | 19.600 |
| Mlc | 107-129 | 19.139 |
| CytR | 306-345 | 17.734 |
| OmpR | 373-392 | 17.073 |
| GcvA | 326-354 | 16.589 |
| GadE | 267-286 | 16.137 |
| IHF | 276-288 | 15.334 |
| NagC | 330-352 | 15.299 |
| FNR | 271-292 | 14.715 |
| ArgP | 38-50 | 14.515 |
| AgaR | 282-305 | 14.419 |
| CysB | 281-322 | 14.100 |
| GlpR | 328-347 | 13.868 |
| PhoP | 261-277 | 13.856 |
| PhoB | 98-117 | 13.594 |
| MelR | 4-21 | 13.513 |
| UlaR | 12-31 | 13.043 |
| SoxS | 361-378 | 13.007 |
| Fis | 143-163 | 12.769 |
| AraC | 126-143 | 12.014 |
| FruR | 165-182 | 11.973 |
| Nac | 269-283 | 11.892 |
| ArgR | 325-340 | 11.860 |
| MarA | 222-242 | 11.671 |
| TyrR | 290-311 | 11.503 |
| LacI | 152-172 | 11.495 |
| H-NS | 371-385 | 11.295 |
| Fur | 371-385 | 11.281 |
| ModE | 280-306 | 10.912 |
| NtrC | 105-121 | 10.355 |
| CRP | 259-280 | 10.326 |
| CpxR | 252-266 | 10.209 |
| NorR | 338-354 | 9.943 |
| PurR | 276-291 | 9.927 |
| Lrp | 297-308 | 9.904 |
| DnaA | 338-346 | 9.731 |
| TorR | 270-279 | 9.517 |
| RcsB | 108-121 | 9.485 |
| UxuR | 174-191 | 9.484 |
| MalT | 290-299 | 9.325 |
| NarL | 187-193 | 9.129 |
| XylR | 274-291 | 8.461 |
| Ada | 273-300 | 8.252 |
| DcuR | 88-142 | 8.133 |
| PspF | 368-384 | 8.120 |
| DeoR | 273-288 | 7.981 |
| IdnR | 303-318 | 7.706 |
| Rob | 293-313 | 7.225 |
| MetR | 296-319 | 7.157 |
| MetJ | 139-146 | 6.460 |
| CueR | 358-376 | 6.057 |
| RhaS | 195-211 | 5.867 |
| NarP | 159-165 | 5.632 |
| GalS | 35-50 | 5.571 |
| GalR | 35-50 | 5.571 |
| GntR | 238-257 | 5.191 |