| TF name | Position | PWM scan score |
| ArcA | 209-269 | 25.105 |
| CysB | 150-191 | 20.302 |
| Fur | 110-124 | 19.250 |
| PhoP | 326-342 | 18.111 |
| OxyR | 315-359 | 17.758 |
| NorR | 208-224 | 15.936 |
| Mlc | 135-157 | 15.709 |
| CytR | 314-353 | 15.407 |
| OmpR | 300-319 | 15.016 |
| Nac | 370-384 | 14.943 |
| FNR | 167-188 | 14.901 |
| Fis | 215-235 | 14.245 |
| RcsB | 201-214 | 14.226 |
| CRP | 195-216 | 14.175 |
| NagC | 369-391 | 14.163 |
| UlaR | 210-229 | 14.047 |
| DeoR | 54-69 | 14.020 |
| SoxS | 250-267 | 13.858 |
| MetJ | 161-168 | 13.753 |
| MelR | 235-252 | 13.664 |
| H-NS | 184-198 | 13.599 |
| DcuR | 157-211 | 13.532 |
| PhoB | 7-26 | 13.113 |
| XylR | 262-279 | 12.863 |
| Rob | 229-249 | 12.656 |
| ArgR | 149-164 | 12.484 |
| AgaR | 97-120 | 11.985 |
| IHF | 116-128 | 11.837 |
| TyrR | 270-291 | 11.836 |
| MarA | 333-353 | 11.744 |
| CpxR | 327-341 | 11.274 |
| AraC | 197-214 | 11.240 |
| GadE | 263-282 | 10.978 |
| GcvA | 313-341 | 10.733 |
| Lrp | 16-27 | 10.460 |
| NtrC | 354-370 | 10.452 |
| IdnR | 236-251 | 10.026 |
| Ada | 296-323 | 9.988 |
| ModE | 74-100 | 9.802 |
| GlpR | 225-244 | 9.623 |
| NarL | 261-267 | 9.376 |
| TorR | 281-290 | 8.957 |
| FruR | 106-123 | 8.529 |
| RhaS | 35-51 | 8.052 |
| ArgP | 258-270 | 7.895 |
| FadR | 69-85 | 7.786 |
| GntR | 287-306 | 7.583 |
| FhlA | 160-199 | 7.573 |
| LexA | 210-229 | 7.514 |
| PspF | 31-47 | 7.304 |
| MetR | 321-344 | 6.660 |
| DnaA | 84-92 | 6.502 |
| GalS | 231-246 | 6.434 |
| GalR | 231-246 | 6.434 |
| MalT | 356-365 | 6.023 |
| NarP | 263-269 | 5.708 |
| UxuR | 255-272 | 5.109 |