| TF name | Position | PWM scan score |
| ArcA | 144-204 | 36.547 |
| CytR | 180-219 | 21.366 |
| DcuR | 204-258 | 18.343 |
| OxyR | 167-211 | 17.879 |
| FNR | 171-192 | 17.263 |
| Fur | 138-152 | 17.134 |
| IdnR | 351-366 | 17.013 |
| OmpR | 203-222 | 16.811 |
| CysB | 139-180 | 16.779 |
| CaiF | 189-233 | 16.747 |
| Rob | 63-83 | 16.231 |
| GadE | 134-153 | 15.960 |
| GcvA | 198-226 | 15.948 |
| CRP | 204-225 | 15.731 |
| H-NS | 211-225 | 15.533 |
| Nac | 169-183 | 15.401 |
| RcsB | 217-230 | 15.090 |
| ModE | 156-182 | 14.981 |
| Mlc | 350-372 | 14.291 |
| MetR | 255-278 | 14.232 |
| Fis | 203-223 | 14.196 |
| UxuR | 182-199 | 13.936 |
| PhoP | 176-192 | 13.842 |
| MelR | 213-230 | 13.140 |
| PhoB | 212-231 | 12.973 |
| CpxR | 287-301 | 12.781 |
| TorR | 170-179 | 12.512 |
| IHF | 216-228 | 12.216 |
| Lrp | 219-230 | 11.691 |
| UlaR | 159-178 | 11.656 |
| DnaA | 224-232 | 11.578 |
| ArgP | 172-184 | 10.662 |
| GlpR | 146-165 | 10.637 |
| MarA | 162-182 | 10.612 |
| SoxS | 77-94 | 10.506 |
| NagC | 339-361 | 10.357 |
| AraC | 138-155 | 10.162 |
| AgaR | 330-353 | 9.993 |
| ArgR | 126-141 | 9.798 |
| NorR | 131-147 | 8.976 |
| DeoR | 199-214 | 8.950 |
| GntR | 187-206 | 8.675 |
| NtrC | 198-214 | 8.552 |
| TrpR | 180-197 | 8.227 |
| PspF | 210-226 | 8.221 |
| GalR | 139-154 | 7.668 |
| GalS | 139-154 | 7.668 |
| NarL | 133-139 | 7.544 |
| NarP | 313-319 | 7.325 |
| LacI | 332-352 | 6.912 |
| TyrR | 126-147 | 6.803 |
| XylR | 275-292 | 6.311 |
| RhaS | 196-212 | 6.258 |
| Ada | 263-290 | 5.858 |
| MetJ | 132-139 | 5.744 |
| FadR | 72-88 | 5.195 |
| PurR | 139-154 | 5.056 |
| MalT | 276-285 | 5.008 |