| TF name | Position | PWM scan score |
| ArcA | 324-384 | 22.551 |
| OmpR | 371-390 | 19.943 |
| XylR | 96-113 | 17.949 |
| DeoR | 346-361 | 17.269 |
| CytR | 258-297 | 17.103 |
| NagC | 28-50 | 16.260 |
| GcvA | 367-395 | 15.703 |
| OxyR | 280-324 | 14.969 |
| CysB | 345-386 | 14.668 |
| RcsB | 10-23 | 14.572 |
| FNR | 270-291 | 14.132 |
| H-NS | 349-363 | 13.918 |
| AraC | 7-24 | 13.886 |
| GadE | 346-365 | 12.919 |
| SoxS | 264-281 | 12.709 |
| Fis | 270-290 | 12.696 |
| Lrp | 9-20 | 12.352 |
| AgaR | 258-281 | 12.059 |
| MetJ | 31-38 | 11.889 |
| Rob | 357-377 | 11.254 |
| IdnR | 175-190 | 11.124 |
| CRP | 280-301 | 11.051 |
| Nac | 33-47 | 10.979 |
| GlpR | 83-102 | 10.836 |
| NarL | 352-358 | 10.377 |
| ModE | 359-385 | 10.194 |
| DnaA | 153-161 | 10.127 |
| MarA | 349-369 | 10.065 |
| IHF | 365-377 | 10.063 |
| Mlc | 26-48 | 10.012 |
| FruR | 234-251 | 9.905 |
| DcuR | 175-229 | 9.718 |
| UlaR | 235-254 | 9.138 |
| GntR | 97-116 | 9.136 |
| CpxR | 29-43 | 8.890 |
| ArgP | 349-361 | 8.862 |
| UxuR | 270-287 | 8.675 |
| PhoB | 32-51 | 8.650 |
| PspF | 99-115 | 8.120 |
| ArgR | 382-397 | 8.066 |
| TyrR | 175-196 | 7.835 |
| NtrC | 255-271 | 7.819 |
| TorR | 222-231 | 7.664 |
| Fur | 46-60 | 7.587 |
| PhoP | 213-229 | 7.422 |
| MelR | 214-231 | 7.048 |
| GalR | 265-280 | 6.509 |
| GalS | 265-280 | 6.509 |
| MetR | 14-37 | 6.391 |
| RhaS | 241-257 | 6.027 |
| LacI | 57-77 | 5.955 |
| FadR | 368-384 | 5.727 |
| MalT | 172-181 | 5.723 |
| LexA | 313-332 | 5.585 |
| PurR | 177-192 | 5.276 |