| TF name | Position | PWM scan score |
| ArcA | 292-352 | 37.118 |
| CytR | 263-302 | 26.768 |
| DcuR | 189-243 | 23.245 |
| CysB | 270-311 | 21.897 |
| TyrR | 259-280 | 19.708 |
| OmpR | 307-326 | 19.461 |
| CRP | 263-284 | 19.366 |
| OxyR | 327-371 | 19.077 |
| GadE | 153-172 | 18.449 |
| FNR | 266-287 | 17.368 |
| NagC | 306-328 | 17.342 |
| Fur | 266-280 | 16.668 |
| Mlc | 305-327 | 16.487 |
| CpxR | 291-305 | 15.855 |
| PhoP | 317-333 | 14.997 |
| XylR | 225-242 | 14.963 |
| Fis | 280-300 | 14.885 |
| GlpR | 182-201 | 14.621 |
| RcsB | 275-288 | 13.983 |
| Nac | 354-368 | 13.937 |
| AgaR | 139-162 | 13.791 |
| GcvA | 159-187 | 13.537 |
| Rob | 369-389 | 13.416 |
| MarA | 367-387 | 13.389 |
| H-NS | 164-178 | 13.171 |
| UlaR | 261-280 | 13.158 |
| Lrp | 274-285 | 12.764 |
| IHF | 290-302 | 12.639 |
| ArgP | 153-165 | 11.860 |
| PhoB | 194-213 | 11.807 |
| FruR | 291-308 | 11.749 |
| Ada | 332-359 | 11.314 |
| MetR | 94-117 | 10.989 |
| SoxS | 369-386 | 10.925 |
| ModE | 272-298 | 10.788 |
| UxuR | 2-19 | 10.545 |
| LexA | 284-303 | 10.345 |
| DeoR | 291-306 | 10.241 |
| GntR | 116-135 | 9.949 |
| MelR | 381-398 | 9.810 |
| FadR | 320-336 | 9.699 |
| NarL | 357-363 | 9.333 |
| ArgR | 348-363 | 8.449 |
| PspF | 349-365 | 8.392 |
| DnaA | 156-164 | 8.112 |
| NorR | 265-281 | 7.979 |
| AraC | 63-80 | 7.638 |
| NarP | 6-12 | 7.423 |
| IdnR | 49-64 | 6.645 |
| CaiF | 299-343 | 6.592 |
| MetJ | 284-291 | 6.590 |
| TorR | 355-364 | 6.577 |
| RhaS | 239-255 | 6.447 |
| NtrC | 141-157 | 5.694 |
| MalT | 77-86 | 5.348 |
| GalS | 231-246 | 5.230 |
| GalR | 231-246 | 5.230 |
| LacI | 356-376 | 5.193 |