| TF name | Position | PWM scan score |
| ArcA | 197-257 | 30.468 |
| DcuR | 27-81 | 22.879 |
| AgaR | 303-326 | 20.121 |
| CytR | 200-239 | 19.811 |
| CysB | 138-179 | 19.441 |
| FNR | 214-235 | 18.545 |
| PhoB | 244-263 | 18.051 |
| SoxS | 28-45 | 15.473 |
| OmpR | 212-231 | 15.232 |
| Mlc | 214-236 | 15.193 |
| OxyR | 107-151 | 15.107 |
| Fis | 223-243 | 15.099 |
| NagC | 21-43 | 14.933 |
| H-NS | 221-235 | 14.649 |
| IHF | 305-317 | 14.267 |
| MarA | 125-145 | 14.005 |
| ArgP | 90-102 | 13.725 |
| GcvA | 205-233 | 13.547 |
| MetR | 131-154 | 13.451 |
| PhoP | 92-108 | 13.284 |
| UlaR | 156-175 | 12.817 |
| CRP | 147-168 | 12.811 |
| Nac | 87-101 | 12.530 |
| Fur | 136-150 | 12.304 |
| CpxR | 210-224 | 12.283 |
| RcsB | 17-30 | 11.915 |
| AraC | 237-254 | 11.769 |
| GadE | 59-78 | 11.705 |
| ArgR | 331-346 | 11.488 |
| Lrp | 242-253 | 11.457 |
| PspF | 382-398 | 11.256 |
| GlpR | 32-51 | 11.092 |
| Rob | 110-130 | 10.851 |
| GalR | 120-135 | 10.754 |
| GalS | 120-135 | 10.754 |
| TyrR | 303-324 | 10.676 |
| MelR | 245-262 | 10.541 |
| DeoR | 219-234 | 10.511 |
| LacI | 231-251 | 10.323 |
| Ada | 153-180 | 10.307 |
| CueR | 344-362 | 10.237 |
| UxuR | 99-116 | 10.189 |
| GntR | 228-247 | 10.024 |
| FadR | 105-121 | 9.765 |
| IdnR | 203-218 | 9.586 |
| XylR | 148-165 | 9.584 |
| TorR | 158-167 | 9.476 |
| TrpR | 172-189 | 9.426 |
| LexA | 36-55 | 9.316 |
| DnaA | 256-264 | 9.103 |
| FruR | 199-216 | 9.028 |
| NarL | 48-54 | 8.951 |
| MetJ | 258-265 | 8.010 |
| FhlA | 78-117 | 7.595 |
| NtrC | 240-256 | 7.109 |
| ModE | 135-161 | 6.877 |
| NarP | 203-209 | 6.110 |
| PurR | 137-152 | 5.803 |
| NorR | 338-354 | 5.652 |