| TF name | Position | PWM scan score |
| ArcA | 37-97 | 31.254 |
| CytR | 300-339 | 20.093 |
| CysB | 59-100 | 19.895 |
| GadE | 317-336 | 19.565 |
| OmpR | 380-399 | 18.984 |
| DcuR | 299-353 | 18.864 |
| OxyR | 324-368 | 18.092 |
| NagC | 316-338 | 17.393 |
| PhoB | 371-390 | 16.813 |
| AgaR | 293-316 | 15.468 |
| Ada | 214-241 | 15.259 |
| Nac | 305-319 | 14.751 |
| CRP | 305-326 | 14.365 |
| DeoR | 354-369 | 14.050 |
| H-NS | 268-282 | 13.692 |
| TyrR | 363-384 | 13.529 |
| CpxR | 226-240 | 13.511 |
| IHF | 309-321 | 13.409 |
| FNR | 309-330 | 13.385 |
| RcsB | 58-71 | 13.287 |
| Mlc | 314-336 | 12.994 |
| MetR | 77-100 | 12.990 |
| Fis | 306-326 | 12.704 |
| PhoP | 32-48 | 12.639 |
| Lrp | 380-391 | 12.459 |
| XylR | 223-240 | 12.398 |
| Fur | 295-309 | 12.292 |
| ArgP | 268-280 | 12.280 |
| Rob | 26-46 | 12.132 |
| ArgR | 34-49 | 12.073 |
| UxuR | 109-126 | 11.975 |
| AraC | 34-51 | 11.630 |
| GlpR | 319-338 | 11.273 |
| GcvA | 259-287 | 10.811 |
| FadR | 136-152 | 10.692 |
| UlaR | 309-328 | 10.638 |
| TrpR | 349-366 | 10.608 |
| PspF | 305-321 | 10.336 |
| SoxS | 260-277 | 10.076 |
| MelR | 82-99 | 9.984 |
| IdnR | 351-366 | 9.838 |
| NarL | 121-127 | 9.333 |
| ModE | 358-384 | 9.297 |
| TorR | 308-317 | 9.284 |
| DnaA | 307-315 | 9.252 |
| GntR | 380-399 | 8.653 |
| NorR | 227-243 | 8.338 |
| NarP | 237-243 | 8.306 |
| MarA | 280-300 | 8.128 |
| FruR | 226-243 | 8.034 |
| LexA | 264-283 | 6.939 |
| PurR | 377-392 | 6.240 |
| MetJ | 93-100 | 5.992 |
| LacI | 92-112 | 5.834 |
| FhlA | 349-388 | 5.562 |
| NtrC | 21-37 | 5.365 |
| RhaS | 151-167 | 5.329 |