| TF name | Position | PWM scan score |
| ArcA | 90-150 | 23.628 |
| NagC | 228-250 | 21.419 |
| ModE | 8-34 | 18.740 |
| MetR | 91-114 | 17.761 |
| ArgR | 235-250 | 16.238 |
| H-NS | 227-241 | 15.981 |
| OmpR | 19-38 | 15.561 |
| CRP | 116-137 | 15.092 |
| PhoB | 123-142 | 14.947 |
| Mlc | 86-108 | 14.280 |
| OxyR | 63-107 | 14.180 |
| IHF | 102-114 | 14.087 |
| RcsB | 117-130 | 13.857 |
| TrpR | 346-363 | 13.634 |
| Nac | 121-135 | 13.332 |
| MarA | 117-137 | 13.190 |
| Fur | 39-53 | 13.125 |
| FNR | 102-123 | 13.047 |
| Lrp | 42-53 | 12.763 |
| Fis | 124-144 | 12.215 |
| CysB | 103-144 | 11.972 |
| XylR | 131-148 | 11.914 |
| GcvA | 224-252 | 11.859 |
| SoxS | 118-135 | 11.730 |
| CytR | 107-146 | 11.593 |
| GlpR | 221-240 | 11.122 |
| PurR | 359-374 | 10.975 |
| DeoR | 40-55 | 10.888 |
| DnaA | 25-33 | 10.881 |
| AgaR | 103-126 | 10.583 |
| GadE | 229-248 | 10.296 |
| ArgP | 237-249 | 10.225 |
| Ada | 48-75 | 9.437 |
| GntR | 162-181 | 9.138 |
| MelR | 36-53 | 8.840 |
| UlaR | 219-238 | 8.784 |
| TyrR | 29-50 | 8.752 |
| PspF | 344-360 | 8.731 |
| NarL | 329-335 | 8.681 |
| CpxR | 111-125 | 8.628 |
| LexA | 9-28 | 8.060 |
| GalS | 359-374 | 8.055 |
| GalR | 359-374 | 8.055 |
| IdnR | 109-124 | 8.035 |
| PhoP | 129-145 | 7.873 |
| MetJ | 19-26 | 7.710 |
| NarP | 276-282 | 7.347 |
| AraC | 15-32 | 7.224 |
| FadR | 123-139 | 7.168 |
| TorR | 105-114 | 6.831 |
| MalT | 247-256 | 6.793 |
| LacI | 242-262 | 6.784 |
| NorR | 32-48 | 6.740 |
| RhaS | 194-210 | 6.652 |
| Rob | 67-87 | 6.606 |
| UxuR | 99-116 | 6.274 |
| DcuR | 5-59 | 6.068 |