| TF name | Position | PWM scan score |
| ArcA | 240-300 | 35.220 |
| CysB | 206-247 | 24.875 |
| FNR | 254-275 | 23.817 |
| CytR | 265-304 | 19.610 |
| AgaR | 81-104 | 18.224 |
| Rob | 26-46 | 17.942 |
| GntR | 26-45 | 17.505 |
| Mlc | 203-225 | 17.394 |
| MetR | 214-237 | 16.994 |
| NagC | 185-207 | 16.637 |
| Fis | 260-280 | 16.615 |
| OxyR | 211-255 | 16.472 |
| OmpR | 368-387 | 16.310 |
| SoxS | 365-382 | 16.250 |
| XylR | 370-387 | 15.949 |
| H-NS | 155-169 | 15.578 |
| IHF | 174-186 | 15.346 |
| CpxR | 262-276 | 15.117 |
| MarA | 295-315 | 14.939 |
| CRP | 251-272 | 14.687 |
| DcuR | 82-136 | 14.569 |
| GlpR | 39-58 | 14.172 |
| GadE | 5-24 | 13.889 |
| DeoR | 262-277 | 13.829 |
| PhoB | 45-64 | 13.719 |
| Nac | 278-292 | 13.509 |
| FadR | 127-143 | 13.128 |
| ArgP | 181-193 | 12.911 |
| PhoP | 196-212 | 12.735 |
| Ada | 195-222 | 12.382 |
| GcvA | 200-228 | 12.296 |
| Fur | 186-200 | 11.750 |
| AraC | 202-219 | 11.394 |
| FruR | 283-300 | 11.387 |
| PspF | 267-283 | 11.323 |
| UlaR | 222-241 | 11.222 |
| FhlA | 236-275 | 11.139 |
| MelR | 173-190 | 11.105 |
| ArgR | 204-219 | 10.980 |
| GalR | 85-100 | 10.659 |
| GalS | 85-100 | 10.659 |
| Lrp | 179-190 | 9.839 |
| NarL | 139-145 | 9.729 |
| MetJ | 72-79 | 9.682 |
| TyrR | 176-197 | 9.680 |
| IdnR | 208-223 | 9.677 |
| UxuR | 81-98 | 9.662 |
| NorR | 205-221 | 9.604 |
| ModE | 310-336 | 9.262 |
| PurR | 85-100 | 8.976 |
| RcsB | 156-169 | 7.968 |
| LacI | 324-344 | 6.949 |
| DnaA | 373-381 | 6.339 |
| TorR | 259-268 | 6.324 |
| RhaS | 103-119 | 6.010 |
| NarP | 144-150 | 5.146 |