| TF name | Position | PWM scan score |
| ArcA | 96-156 | 25.268 |
| CysB | 256-297 | 20.214 |
| OxyR | 174-218 | 18.403 |
| FNR | 57-78 | 18.279 |
| NagC | 11-33 | 17.147 |
| OmpR | 198-217 | 17.111 |
| RcsB | 129-142 | 16.780 |
| Rob | 207-227 | 16.238 |
| Fis | 225-245 | 14.811 |
| ModE | 216-242 | 14.583 |
| AgaR | 116-139 | 14.227 |
| Mlc | 305-327 | 13.861 |
| XylR | 52-69 | 13.585 |
| Fur | 157-171 | 13.500 |
| CytR | 292-331 | 13.407 |
| CRP | 123-144 | 13.362 |
| AraC | 331-348 | 13.277 |
| UlaR | 357-376 | 13.087 |
| PhoB | 45-64 | 12.727 |
| IHF | 126-138 | 12.661 |
| IdnR | 120-135 | 12.524 |
| TorR | 122-131 | 12.512 |
| SoxS | 182-199 | 12.466 |
| DeoR | 308-323 | 12.345 |
| Nac | 133-147 | 12.228 |
| MarA | 201-221 | 12.125 |
| Lrp | 333-344 | 11.891 |
| H-NS | 117-131 | 11.600 |
| ArgP | 169-181 | 11.464 |
| GcvA | 296-324 | 11.410 |
| PhoP | 309-325 | 11.371 |
| GadE | 371-390 | 10.983 |
| DcuR | 285-339 | 10.876 |
| CpxR | 234-248 | 10.784 |
| Ada | 342-369 | 10.428 |
| NarL | 244-250 | 10.377 |
| UxuR | 163-180 | 10.216 |
| PspF | 49-65 | 10.064 |
| GntR | 195-214 | 9.920 |
| DnaA | 306-314 | 9.795 |
| ArgR | 10-25 | 9.489 |
| FadR | 169-185 | 9.474 |
| MetJ | 14-21 | 9.382 |
| TyrR | 167-188 | 9.367 |
| MetR | 58-81 | 9.354 |
| GlpR | 364-383 | 9.330 |
| NorR | 150-166 | 8.882 |
| FruR | 291-308 | 8.759 |
| MelR | 114-131 | 8.294 |
| GalS | 367-382 | 7.741 |
| GalR | 367-382 | 7.741 |
| RhaS | 343-359 | 6.910 |
| NarP | 195-201 | 6.794 |
| PurR | 19-34 | 6.732 |
| CueR | 240-258 | 6.520 |
| TrpR | 285-302 | 6.212 |
| LacI | 298-318 | 6.103 |
| NtrC | 286-302 | 5.599 |