| TF name | Position | PWM scan score |
| ArcA | 109-169 | 32.788 |
| CysB | 116-157 | 29.517 |
| NagC | 137-159 | 20.494 |
| CytR | 100-139 | 20.386 |
| H-NS | 190-204 | 19.423 |
| OxyR | 167-211 | 18.158 |
| CpxR | 118-132 | 17.121 |
| Rob | 118-138 | 16.650 |
| GcvA | 209-237 | 16.401 |
| Fis | 270-290 | 16.037 |
| AgaR | 110-133 | 16.013 |
| ModE | 348-374 | 15.433 |
| IHF | 61-73 | 15.346 |
| NorR | 195-211 | 15.053 |
| ArgP | 375-387 | 15.033 |
| SoxS | 141-158 | 14.936 |
| PhoB | 11-30 | 14.862 |
| LexA | 359-378 | 14.571 |
| FNR | 86-107 | 14.568 |
| OmpR | 371-390 | 14.554 |
| DcuR | 113-167 | 14.019 |
| Nac | 361-375 | 13.888 |
| DnaA | 161-169 | 13.567 |
| MarA | 325-345 | 13.555 |
| TyrR | 117-138 | 13.090 |
| GadE | 57-76 | 13.030 |
| CRP | 115-136 | 12.819 |
| Ada | 97-124 | 12.815 |
| Mlc | 114-136 | 12.360 |
| PhoP | 145-161 | 11.971 |
| UlaR | 146-165 | 11.726 |
| ArgR | 365-380 | 11.713 |
| GlpR | 308-327 | 11.682 |
| Lrp | 120-131 | 11.645 |
| RcsB | 213-226 | 11.643 |
| XylR | 116-133 | 11.538 |
| AraC | 363-380 | 10.830 |
| MelR | 90-107 | 10.510 |
| DeoR | 119-134 | 10.244 |
| Fur | 196-210 | 9.710 |
| PspF | 1-17 | 9.557 |
| GntR | 129-148 | 9.362 |
| TorR | 362-371 | 9.263 |
| NarL | 20-26 | 8.951 |
| FadR | 17-33 | 8.739 |
| UxuR | 147-164 | 8.665 |
| IdnR | 202-217 | 7.152 |
| FruR | 152-169 | 6.986 |
| NtrC | 187-203 | 6.574 |
| MetR | 80-103 | 6.478 |
| FhlA | 175-214 | 6.461 |
| MetJ | 267-274 | 6.268 |
| TrpR | 111-128 | 6.183 |
| NarP | 37-43 | 6.061 |