| TF name | Position | PWM scan score |
| ArcA | 45-105 | 22.882 |
| CytR | 70-109 | 19.156 |
| CysB | 60-101 | 17.520 |
| ModE | 59-85 | 15.433 |
| FNR | 191-212 | 15.079 |
| ArgP | 86-98 | 15.033 |
| DeoR | 119-134 | 15.002 |
| IHF | 258-270 | 14.657 |
| LexA | 70-89 | 14.571 |
| OmpR | 82-101 | 14.554 |
| PspF | 278-294 | 14.546 |
| Nac | 72-86 | 13.888 |
| GcvA | 19-47 | 13.729 |
| MarA | 36-56 | 13.555 |
| H-NS | 90-104 | 13.381 |
| MetR | 225-248 | 13.343 |
| TrpR | 210-227 | 12.645 |
| SoxS | 81-98 | 12.624 |
| NagC | 77-99 | 12.379 |
| CRP | 204-225 | 12.257 |
| TyrR | 240-261 | 12.138 |
| OxyR | 9-53 | 11.838 |
| Mlc | 28-50 | 11.783 |
| NorR | 284-300 | 11.759 |
| ArgR | 76-91 | 11.713 |
| GlpR | 19-38 | 11.682 |
| FhlA | 171-210 | 11.543 |
| GadE | 78-97 | 11.485 |
| Fis | 140-160 | 11.258 |
| Rob | 282-302 | 11.193 |
| Lrp | 85-96 | 11.084 |
| UlaR | 15-34 | 11.003 |
| AraC | 74-91 | 10.830 |
| PhoP | 133-149 | 10.108 |
| PhoB | 83-102 | 9.541 |
| RhaS | 270-286 | 9.416 |
| TorR | 73-82 | 9.263 |
| AgaR | 67-90 | 9.172 |
| GntR | 273-292 | 9.016 |
| CpxR | 89-103 | 8.892 |
| DnaA | 72-80 | 8.866 |
| Fur | 196-210 | 8.702 |
| Ada | 98-125 | 8.658 |
| RcsB | 86-99 | 8.372 |
| FadR | 289-305 | 8.126 |
| XylR | 76-93 | 8.062 |
| DcuR | 65-119 | 7.918 |
| CueR | 275-293 | 7.581 |
| GalS | 340-355 | 7.436 |
| GalR | 340-355 | 7.436 |
| UxuR | 59-76 | 6.882 |
| NarL | 265-271 | 6.687 |
| MelR | 234-251 | 6.638 |
| IdnR | 73-88 | 6.635 |
| MalT | 200-209 | 5.463 |
| NarP | 234-240 | 5.349 |
| PurR | 352-367 | 5.183 |