| TF name | Position | PWM scan score |
| ArcA | 139-199 | 24.682 |
| TyrR | 170-191 | 22.085 |
| OmpR | 172-191 | 21.101 |
| CysB | 178-219 | 18.033 |
| UlaR | 345-364 | 17.868 |
| Rob | 136-156 | 17.427 |
| PspF | 335-351 | 17.239 |
| CytR | 173-212 | 17.022 |
| NagC | 286-308 | 16.544 |
| CpxR | 172-186 | 16.440 |
| UxuR | 339-356 | 15.289 |
| OxyR | 146-190 | 15.273 |
| AgaR | 175-198 | 14.668 |
| IHF | 10-22 | 14.657 |
| AraC | 307-324 | 14.632 |
| ModE | 177-203 | 14.422 |
| GcvA | 251-279 | 14.186 |
| GalS | 375-390 | 14.153 |
| GalR | 375-390 | 14.153 |
| H-NS | 336-350 | 14.071 |
| PhoP | 142-158 | 14.048 |
| PhoB | 146-165 | 13.696 |
| Fis | 339-359 | 13.593 |
| FNR | 176-197 | 13.576 |
| SoxS | 201-218 | 13.089 |
| RcsB | 167-180 | 12.849 |
| CRP | 179-200 | 12.519 |
| Nac | 186-200 | 12.149 |
| MetJ | 361-368 | 11.820 |
| Lrp | 286-297 | 11.808 |
| NorR | 36-52 | 11.759 |
| Mlc | 286-308 | 11.749 |
| DcuR | 274-328 | 11.527 |
| TorR | 382-391 | 11.342 |
| PurR | 375-390 | 11.158 |
| ArgR | 10-25 | 10.967 |
| DeoR | 351-366 | 10.381 |
| GadE | 303-322 | 10.337 |
| IdnR | 372-387 | 10.214 |
| XylR | 341-358 | 10.027 |
| MetR | 165-188 | 9.887 |
| ArgP | 17-29 | 9.545 |
| RhaS | 22-38 | 9.416 |
| Fur | 339-353 | 9.181 |
| Ada | 157-184 | 9.169 |
| GlpR | 363-382 | 9.062 |
| GntR | 25-44 | 9.016 |
| FhlA | 359-398 | 8.885 |
| MarA | 215-235 | 8.804 |
| NarL | 286-292 | 8.131 |
| FadR | 41-57 | 8.126 |
| MelR | 148-165 | 7.758 |
| CueR | 27-45 | 7.581 |
| MalT | 164-173 | 7.441 |
| LexA | 36-55 | 7.241 |
| LacI | 271-291 | 7.036 |
| DnaA | 120-128 | 6.454 |