| TF name | Position | PWM scan score |
| ArcA | 245-305 | 28.467 |
| CysB | 149-190 | 22.750 |
| AgaR | 269-292 | 19.681 |
| CaiF | 149-193 | 19.561 |
| NorR | 322-338 | 19.166 |
| CytR | 246-285 | 18.727 |
| FNR | 227-248 | 17.834 |
| PhoP | 234-250 | 17.550 |
| UlaR | 352-371 | 17.026 |
| NagC | 353-375 | 16.871 |
| GlpR | 166-185 | 16.853 |
| CRP | 337-358 | 16.667 |
| OxyR | 256-300 | 15.645 |
| RcsB | 274-287 | 15.352 |
| ArgP | 62-74 | 15.143 |
| TyrR | 251-272 | 14.973 |
| H-NS | 186-200 | 14.174 |
| IHF | 59-71 | 13.948 |
| PspF | 248-264 | 13.744 |
| Rob | 320-340 | 13.199 |
| OmpR | 101-120 | 13.133 |
| Mlc | 231-253 | 12.982 |
| DcuR | 238-292 | 12.965 |
| GcvA | 152-180 | 12.941 |
| Fis | 104-124 | 12.889 |
| DeoR | 280-295 | 12.611 |
| MetR | 117-140 | 12.113 |
| ArgR | 243-258 | 11.950 |
| GadE | 362-381 | 11.812 |
| XylR | 250-267 | 11.642 |
| GntR | 359-378 | 11.603 |
| Fur | 261-275 | 11.448 |
| GalR | 99-114 | 11.431 |
| GalS | 99-114 | 11.431 |
| SoxS | 255-272 | 11.402 |
| Lrp | 244-255 | 11.213 |
| Nac | 7-21 | 11.131 |
| PhoB | 117-136 | 11.118 |
| CpxR | 59-73 | 10.937 |
| ModE | 173-199 | 10.423 |
| NarL | 157-163 | 10.130 |
| FhlA | 220-259 | 10.009 |
| DnaA | 65-73 | 10.007 |
| TorR | 240-249 | 9.987 |
| AraC | 3-20 | 9.708 |
| LexA | 322-341 | 9.594 |
| FruR | 184-201 | 9.559 |
| UxuR | 68-85 | 9.296 |
| MarA | 255-275 | 8.938 |
| MelR | 268-285 | 8.635 |
| IdnR | 127-142 | 8.327 |
| MalT | 104-113 | 8.210 |
| Ada | 46-73 | 8.185 |
| LacI | 255-275 | 7.795 |
| FadR | 195-211 | 7.575 |
| MetJ | 252-259 | 7.224 |
| RhaS | 261-277 | 6.363 |
| TrpR | 331-348 | 5.816 |
| NarP | 3-9 | 5.593 |
| NtrC | 6-22 | 5.411 |
| PurR | 182-197 | 5.321 |