| TF name | Position | PWM scan score |
| ArcA | 210-270 | 34.662 |
| CysB | 197-238 | 25.714 |
| CytR | 136-175 | 21.339 |
| DcuR | 328-382 | 20.818 |
| OmpR | 136-155 | 20.563 |
| GcvA | 197-225 | 19.601 |
| FNR | 302-323 | 18.629 |
| OxyR | 205-249 | 18.403 |
| NagC | 80-102 | 18.357 |
| Mlc | 10-32 | 17.039 |
| AgaR | 210-233 | 16.679 |
| Fur | 151-165 | 16.499 |
| Rob | 361-381 | 16.439 |
| NorR | 341-357 | 15.758 |
| CRP | 131-152 | 15.331 |
| TyrR | 176-197 | 15.284 |
| Fis | 176-196 | 15.278 |
| ModE | 143-169 | 15.043 |
| SoxS | 309-326 | 14.945 |
| H-NS | 139-153 | 14.801 |
| UlaR | 211-230 | 14.791 |
| PhoB | 314-333 | 14.471 |
| IHF | 99-111 | 14.412 |
| Nac | 223-237 | 14.124 |
| GadE | 364-383 | 14.119 |
| MarA | 139-159 | 13.492 |
| DeoR | 362-377 | 13.476 |
| MelR | 195-212 | 13.327 |
| CpxR | 207-221 | 13.320 |
| Lrp | 92-103 | 12.901 |
| RcsB | 158-171 | 12.855 |
| ArgP | 378-390 | 12.734 |
| PhoP | 181-197 | 12.727 |
| ArgR | 131-146 | 12.582 |
| MetR | 85-108 | 11.864 |
| AraC | 196-213 | 11.615 |
| GlpR | 267-286 | 11.428 |
| XylR | 22-39 | 11.173 |
| UxuR | 289-306 | 11.025 |
| NtrC | 199-215 | 10.833 |
| DnaA | 207-215 | 10.713 |
| GntR | 222-241 | 10.164 |
| Ada | 65-92 | 10.132 |
| NarL | 363-369 | 10.130 |
| IdnR | 212-227 | 10.026 |
| FhlA | 219-258 | 9.998 |
| PspF | 17-33 | 9.265 |
| NarP | 154-160 | 8.306 |
| TorR | 301-310 | 8.078 |
| MetJ | 108-115 | 8.047 |
| LexA | 127-146 | 7.899 |
| MalT | 71-80 | 7.098 |
| FruR | 22-39 | 7.027 |
| GalS | 263-278 | 6.089 |
| GalR | 263-278 | 6.089 |
| RhaS | 12-28 | 5.411 |