| TF name | Position | PWM scan score |
| ArcA | 249-309 | 27.737 |
| Fur | 11-25 | 20.463 |
| ArgR | 69-84 | 20.238 |
| CysB | 278-319 | 19.975 |
| NagC | 252-274 | 18.594 |
| CpxR | 137-151 | 17.257 |
| CytR | 78-117 | 16.810 |
| UlaR | 69-88 | 16.554 |
| SoxS | 366-383 | 16.548 |
| OmpR | 74-93 | 15.769 |
| H-NS | 377-391 | 15.657 |
| CRP | 177-198 | 15.621 |
| PhoP | 67-83 | 15.412 |
| IHF | 73-85 | 15.402 |
| Fis | 63-83 | 14.836 |
| FNR | 11-32 | 14.758 |
| PspF | 8-24 | 14.731 |
| Ada | 57-84 | 14.534 |
| Nac | 214-228 | 14.218 |
| ModE | 222-248 | 14.145 |
| NorR | 248-264 | 13.878 |
| RcsB | 247-260 | 13.326 |
| OxyR | 231-275 | 13.172 |
| Rob | 302-322 | 13.048 |
| GlpR | 257-276 | 12.873 |
| Mlc | 72-94 | 12.850 |
| GadE | 306-325 | 12.549 |
| GcvA | 73-101 | 12.348 |
| PhoB | 309-328 | 12.003 |
| DnaA | 107-115 | 11.746 |
| ArgP | 72-84 | 11.548 |
| LacI | 92-112 | 11.401 |
| DeoR | 367-382 | 10.890 |
| Lrp | 76-87 | 10.871 |
| LexA | 156-175 | 10.756 |
| AgaR | 291-314 | 10.735 |
| XylR | 192-209 | 10.420 |
| TyrR | 171-192 | 10.353 |
| MarA | 364-384 | 10.290 |
| GalS | 28-43 | 10.186 |
| GalR | 28-43 | 10.186 |
| MelR | 71-88 | 10.165 |
| NarL | 37-43 | 10.130 |
| DcuR | 208-262 | 10.060 |
| AraC | 36-53 | 9.775 |
| MetR | 61-84 | 9.748 |
| UxuR | 344-361 | 9.014 |
| TorR | 108-117 | 7.891 |
| NtrC | 131-147 | 7.875 |
| MetJ | 219-226 | 7.542 |
| NarP | 24-30 | 7.423 |
| IdnR | 166-181 | 6.984 |
| GntR | 247-266 | 6.155 |
| FruR | 12-29 | 6.004 |
| PurR | 169-184 | 5.199 |
| CueR | 213-231 | 5.194 |