| TF name | Position | PWM scan score |
| ArcA | 326-386 | 23.658 |
| OxyR | 327-371 | 17.182 |
| FNR | 353-374 | 16.251 |
| RcsB | 56-69 | 14.913 |
| XylR | 209-226 | 14.218 |
| GlpR | 361-380 | 13.303 |
| GcvA | 16-44 | 13.297 |
| OmpR | 286-305 | 13.047 |
| CysB | 159-200 | 13.003 |
| GadE | 219-238 | 12.766 |
| IHF | 341-353 | 12.348 |
| DnaA | 301-309 | 12.072 |
| Nac | 57-71 | 12.024 |
| TyrR | 146-167 | 11.816 |
| Rob | 200-220 | 11.439 |
| ArgP | 367-379 | 11.360 |
| Ada | 197-224 | 10.871 |
| H-NS | 250-264 | 10.749 |
| Mlc | 346-368 | 10.363 |
| UlaR | 338-357 | 10.293 |
| CRP | 359-380 | 10.258 |
| MetR | 336-359 | 10.237 |
| Lrp | 131-142 | 10.008 |
| Fis | 209-229 | 10.000 |
| ArgR | 359-374 | 9.519 |
| SoxS | 161-178 | 9.374 |
| IdnR | 9-24 | 9.331 |
| PhoP | 343-359 | 9.054 |
| NagC | 86-108 | 8.954 |
| AraC | 53-70 | 8.924 |
| CytR | 299-338 | 8.906 |
| MelR | 366-383 | 8.755 |
| NarL | 358-364 | 8.728 |
| PspF | 287-303 | 8.637 |
| PhoB | 100-119 | 8.444 |
| UxuR | 157-174 | 8.396 |
| TorR | 151-160 | 8.217 |
| NorR | 274-290 | 7.915 |
| MarA | 271-291 | 7.895 |
| GalR | 276-291 | 7.775 |
| GalS | 276-291 | 7.775 |
| LacI | 135-155 | 7.714 |
| Fur | 280-294 | 7.547 |
| NtrC | 223-239 | 7.301 |
| AgaR | 328-351 | 6.729 |
| GntR | 344-363 | 6.588 |
| MalT | 125-134 | 6.420 |
| CueR | 378-396 | 6.376 |
| MetJ | 152-159 | 6.375 |
| ModE | 204-230 | 6.299 |
| FruR | 209-226 | 6.126 |
| CpxR | 137-151 | 5.635 |
| DeoR | 135-150 | 5.383 |
| NarP | 197-203 | 5.283 |
| RhaS | 35-51 | 5.245 |