| TF name | Position | PWM scan score |
| ArcA | 242-302 | 43.031 |
| OmpR | 255-274 | 26.552 |
| OxyR | 243-287 | 25.170 |
| CytR | 246-285 | 23.014 |
| CysB | 242-283 | 22.878 |
| H-NS | 257-271 | 19.945 |
| NagC | 259-281 | 19.479 |
| PhoP | 263-279 | 19.168 |
| FNR | 259-280 | 18.697 |
| CRP | 2-23 | 18.423 |
| Fur | 263-277 | 18.171 |
| PhoB | 269-288 | 18.065 |
| GcvA | 254-282 | 17.983 |
| GadE | 268-287 | 16.652 |
| DcuR | 240-294 | 15.933 |
| Mlc | 260-282 | 15.757 |
| Fis | 259-279 | 15.608 |
| RcsB | 81-94 | 15.285 |
| UlaR | 272-291 | 14.788 |
| IHF | 272-284 | 14.692 |
| TyrR | 240-261 | 13.541 |
| GlpR | 4-23 | 13.278 |
| DeoR | 45-60 | 13.263 |
| IdnR | 70-85 | 12.900 |
| CpxR | 305-319 | 12.835 |
| UxuR | 269-286 | 12.778 |
| Rob | 266-286 | 12.701 |
| ArgR | 265-280 | 12.500 |
| Lrp | 42-53 | 12.414 |
| AgaR | 2-25 | 11.844 |
| Nac | 355-369 | 11.818 |
| AraC | 273-290 | 11.637 |
| MarA | 191-211 | 11.583 |
| SoxS | 20-37 | 11.522 |
| NtrC | 122-138 | 11.425 |
| GntR | 360-379 | 11.163 |
| MelR | 75-92 | 10.812 |
| NorR | 79-95 | 10.648 |
| TorR | 44-53 | 10.329 |
| XylR | 76-93 | 10.218 |
| MetR | 28-51 | 9.815 |
| NarL | 24-30 | 9.580 |
| ArgP | 111-123 | 9.490 |
| ModE | 69-95 | 9.294 |
| Ada | 315-342 | 9.249 |
| PspF | 295-311 | 9.087 |
| DnaA | 229-237 | 9.060 |
| PurR | 253-268 | 8.090 |
| FadR | 275-291 | 7.429 |
| MetJ | 233-240 | 7.328 |
| LexA | 358-377 | 7.189 |
| GalS | 64-79 | 7.148 |
| GalR | 64-79 | 7.148 |
| NarP | 3-9 | 6.794 |
| RhaS | 360-376 | 6.681 |
| FruR | 295-312 | 6.557 |
| FhlA | 80-119 | 6.132 |
| CaiF | 44-88 | 5.897 |
| CueR | 62-80 | 5.540 |