| TF name | Position | PWM scan score |
| ArcA | 316-376 | 33.007 |
| CysB | 320-361 | 22.285 |
| CytR | 296-335 | 22.094 |
| OmpR | 298-317 | 21.075 |
| GadE | 298-317 | 20.862 |
| Ada | 340-367 | 19.191 |
| ArgR | 319-334 | 16.475 |
| H-NS | 361-375 | 16.213 |
| NagC | 175-197 | 15.840 |
| DcuR | 309-363 | 15.211 |
| GcvA | 353-381 | 15.087 |
| FNR | 343-364 | 15.065 |
| Fis | 316-336 | 14.414 |
| IHF | 352-364 | 14.381 |
| Nac | 315-329 | 14.356 |
| MetJ | 91-98 | 13.753 |
| PhoB | 354-373 | 13.416 |
| DeoR | 6-21 | 13.403 |
| OxyR | 216-260 | 13.396 |
| Fur | 121-135 | 13.283 |
| Rob | 267-287 | 13.250 |
| ArgP | 215-227 | 13.181 |
| UlaR | 319-338 | 12.948 |
| CpxR | 295-309 | 12.910 |
| AgaR | 351-374 | 12.863 |
| TyrR | 293-314 | 12.858 |
| GlpR | 360-379 | 12.759 |
| Lrp | 358-369 | 12.129 |
| Mlc | 360-382 | 12.072 |
| MetR | 290-313 | 11.821 |
| UxuR | 265-282 | 11.814 |
| RcsB | 187-200 | 11.558 |
| MarA | 379-399 | 11.005 |
| PhoP | 186-202 | 10.514 |
| CRP | 256-277 | 10.500 |
| NorR | 351-367 | 9.604 |
| SoxS | 177-194 | 8.866 |
| XylR | 323-340 | 8.855 |
| TorR | 28-37 | 8.796 |
| AraC | 292-309 | 8.456 |
| FadR | 20-36 | 8.174 |
| NarL | 360-366 | 8.131 |
| ModE | 343-369 | 8.028 |
| MelR | 121-138 | 8.001 |
| DnaA | 266-274 | 7.974 |
| RhaS | 276-292 | 7.741 |
| GntR | 273-292 | 7.421 |
| PspF | 261-277 | 7.049 |
| NarP | 223-229 | 6.295 |
| MalT | 52-61 | 5.979 |
| LexA | 342-361 | 5.782 |
| LacI | 301-321 | 5.764 |
| IdnR | 293-308 | 5.725 |
| FruR | 308-325 | 5.447 |
| PurR | 295-310 | 5.226 |