| TF name | Position | PWM scan score |
| ArcA | 9-69 | 21.577 |
| FNR | 237-258 | 19.050 |
| SoxS | 95-112 | 17.970 |
| CysB | 33-74 | 17.883 |
| TyrR | 234-255 | 15.881 |
| OmpR | 324-343 | 15.160 |
| H-NS | 60-74 | 14.795 |
| Mlc | 337-359 | 14.632 |
| MarA | 93-113 | 14.155 |
| AraC | 380-397 | 13.641 |
| IHF | 54-66 | 13.336 |
| Fis | 63-83 | 12.870 |
| Rob | 322-342 | 12.615 |
| Fur | 241-255 | 12.546 |
| MelR | 71-88 | 12.007 |
| GntR | 57-76 | 11.850 |
| ArgR | 69-84 | 11.846 |
| PhoP | 242-258 | 11.726 |
| OxyR | 280-324 | 11.678 |
| GadE | 375-394 | 11.585 |
| RcsB | 386-399 | 11.451 |
| PurR | 332-347 | 11.388 |
| NagC | 60-82 | 11.331 |
| GalS | 332-347 | 11.279 |
| GalR | 332-347 | 11.279 |
| DnaA | 193-201 | 11.099 |
| Nac | 127-141 | 10.863 |
| IdnR | 343-358 | 10.758 |
| DeoR | 245-260 | 10.715 |
| Lrp | 249-260 | 10.693 |
| GcvA | 6-34 | 10.203 |
| AgaR | 239-262 | 10.103 |
| CRP | 288-309 | 10.077 |
| PhoB | 71-90 | 9.979 |
| LexA | 318-337 | 9.943 |
| CytR | 102-141 | 9.879 |
| UlaR | 237-256 | 9.758 |
| UxuR | 205-222 | 9.279 |
| TorR | 296-305 | 9.277 |
| ModE | 51-77 | 9.276 |
| NarL | 390-396 | 8.932 |
| PspF | 42-58 | 8.731 |
| Ada | 234-261 | 8.729 |
| CpxR | 193-207 | 8.521 |
| ArgP | 305-317 | 8.471 |
| NorR | 366-382 | 8.254 |
| MetR | 125-148 | 8.243 |
| NtrC | 364-380 | 7.684 |
| FruR | 192-209 | 7.623 |
| LacI | 88-108 | 7.553 |
| FhlA | 26-65 | 7.381 |
| GlpR | 100-119 | 7.291 |
| MetJ | 357-364 | 7.270 |
| XylR | 97-114 | 6.447 |
| NarP | 195-201 | 5.995 |
| FadR | 40-56 | 5.699 |