| TF name | Position | PWM scan score |
| ArcA | 248-308 | 29.054 |
| CysB | 255-296 | 18.396 |
| GadE | 252-271 | 17.534 |
| OmpR | 281-300 | 17.452 |
| H-NS | 281-295 | 16.714 |
| CRP | 253-274 | 16.411 |
| MarA | 275-295 | 15.845 |
| AraC | 242-259 | 14.848 |
| NagC | 8-30 | 14.634 |
| RcsB | 290-303 | 14.567 |
| Rob | 251-271 | 14.478 |
| Fis | 283-303 | 14.420 |
| UlaR | 215-234 | 14.065 |
| AgaR | 241-264 | 13.903 |
| ArgR | 179-194 | 13.858 |
| PhoB | 265-284 | 13.645 |
| FNR | 242-263 | 13.361 |
| Nac | 252-266 | 13.010 |
| Mlc | 247-269 | 12.897 |
| GlpR | 283-302 | 12.796 |
| SoxS | 277-294 | 12.654 |
| Lrp | 281-292 | 12.626 |
| OxyR | 228-272 | 12.588 |
| IHF | 248-260 | 12.377 |
| PhoP | 247-263 | 12.344 |
| PspF | 184-200 | 12.166 |
| Fur | 242-256 | 11.794 |
| TyrR | 244-265 | 11.791 |
| XylR | 180-197 | 11.755 |
| Ada | 290-317 | 11.754 |
| GalR | 354-369 | 11.540 |
| GalS | 354-369 | 11.540 |
| PurR | 122-137 | 11.467 |
| CpxR | 279-293 | 11.384 |
| NorR | 247-263 | 11.370 |
| ModE | 176-202 | 11.118 |
| UxuR | 209-226 | 10.545 |
| DeoR | 288-303 | 10.212 |
| ArgP | 363-375 | 9.933 |
| NarL | 250-256 | 9.580 |
| CytR | 247-286 | 9.497 |
| NtrC | 245-261 | 9.201 |
| MetR | 230-253 | 8.516 |
| DnaA | 302-310 | 8.444 |
| TorR | 91-100 | 8.347 |
| FadR | 291-307 | 8.315 |
| GcvA | 40-68 | 7.928 |
| GntR | 251-270 | 7.850 |
| RhaS | 80-96 | 7.767 |
| LexA | 279-298 | 7.715 |
| FruR | 279-296 | 6.739 |
| FhlA | 217-256 | 6.640 |
| MalT | 300-309 | 6.503 |
| IdnR | 290-305 | 6.457 |
| MelR | 262-279 | 6.058 |
| LacI | 114-134 | 5.562 |
| MetJ | 238-245 | 5.548 |