| TF name | Position | PWM scan score |
| ArcA | 119-179 | 30.131 |
| CysB | 116-157 | 17.735 |
| NagC | 139-161 | 16.964 |
| FhlA | 128-167 | 16.012 |
| CytR | 119-158 | 15.661 |
| Nac | 229-243 | 15.032 |
| NorR | 202-218 | 14.583 |
| PspF | 194-210 | 14.385 |
| OmpR | 140-159 | 14.372 |
| Fis | 153-173 | 14.086 |
| Rob | 361-381 | 14.047 |
| Mlc | 137-159 | 13.910 |
| GcvA | 168-196 | 13.671 |
| FNR | 93-114 | 13.339 |
| UxuR | 98-115 | 13.231 |
| H-NS | 163-177 | 13.123 |
| AraC | 130-147 | 13.063 |
| PhoP | 150-166 | 12.899 |
| GadE | 314-333 | 12.583 |
| UlaR | 120-139 | 12.131 |
| AgaR | 122-145 | 11.759 |
| OxyR | 107-151 | 11.667 |
| MetR | 121-144 | 11.186 |
| DcuR | 116-170 | 11.185 |
| DnaA | 368-376 | 10.907 |
| XylR | 226-243 | 10.751 |
| TyrR | 136-157 | 10.741 |
| TorR | 230-239 | 10.649 |
| IHF | 360-372 | 10.591 |
| CueR | 279-297 | 10.482 |
| LexA | 28-47 | 10.475 |
| CRP | 134-155 | 10.353 |
| RcsB | 228-241 | 10.341 |
| SoxS | 151-168 | 10.073 |
| ArgP | 232-244 | 9.970 |
| Ada | 117-144 | 9.941 |
| CpxR | 273-287 | 9.469 |
| PhoB | 294-313 | 9.420 |
| NarL | 151-157 | 9.240 |
| MelR | 355-372 | 9.202 |
| IdnR | 32-47 | 9.143 |
| MarA | 156-176 | 9.068 |
| Lrp | 228-239 | 9.004 |
| ModE | 129-155 | 8.520 |
| Fur | 301-315 | 8.472 |
| FadR | 70-86 | 7.500 |
| ArgR | 357-372 | 7.380 |
| RhaS | 377-393 | 6.530 |
| GalR | 360-375 | 6.465 |
| GalS | 360-375 | 6.465 |
| MetJ | 93-100 | 6.292 |
| DeoR | 282-297 | 6.192 |
| GntR | 203-222 | 6.037 |
| GlpR | 155-174 | 5.819 |
| NtrC | 200-216 | 5.670 |
| MalT | 225-234 | 5.072 |