| TF name | Position | PWM scan score |
| ArcA | 193-253 | 24.487 |
| CysB | 192-233 | 22.821 |
| OxyR | 192-236 | 21.951 |
| FhlA | 358-397 | 20.612 |
| Fur | 189-203 | 17.962 |
| CRP | 232-253 | 17.316 |
| CytR | 197-236 | 16.893 |
| ModE | 189-215 | 16.089 |
| TyrR | 119-140 | 15.313 |
| FNR | 300-321 | 15.161 |
| UlaR | 318-337 | 15.101 |
| H-NS | 45-59 | 13.924 |
| OmpR | 110-129 | 13.813 |
| UxuR | 219-236 | 13.758 |
| ArgR | 292-307 | 13.490 |
| DeoR | 365-380 | 13.476 |
| IHF | 195-207 | 13.343 |
| MetR | 187-210 | 13.338 |
| Fis | 3-23 | 13.051 |
| Mlc | 31-53 | 12.761 |
| NagC | 364-386 | 12.582 |
| ArgP | 205-217 | 12.231 |
| MelR | 174-191 | 12.212 |
| PhoP | 225-241 | 12.142 |
| MarA | 377-397 | 12.057 |
| SoxS | 312-329 | 11.827 |
| GadE | 206-225 | 11.578 |
| Ada | 346-373 | 11.576 |
| Lrp | 192-203 | 11.451 |
| GlpR | 47-66 | 11.408 |
| GalS | 301-316 | 10.774 |
| GalR | 301-316 | 10.774 |
| PspF | 45-61 | 10.346 |
| Nac | 187-201 | 10.071 |
| DnaA | 32-40 | 10.007 |
| GcvA | 192-220 | 9.830 |
| NtrC | 180-196 | 9.825 |
| RcsB | 329-342 | 9.777 |
| PhoB | 20-39 | 9.611 |
| GntR | 297-316 | 9.439 |
| TorR | 203-212 | 9.424 |
| AgaR | 297-320 | 8.764 |
| NarL | 366-372 | 8.681 |
| Rob | 296-316 | 8.625 |
| AraC | 189-206 | 8.563 |
| LexA | 111-130 | 8.380 |
| NarP | 110-116 | 8.031 |
| XylR | 217-234 | 7.637 |
| CpxR | 337-351 | 7.118 |
| LacI | 126-146 | 6.408 |
| NorR | 233-249 | 6.374 |
| RhaS | 49-65 | 6.076 |
| MalT | 278-287 | 5.734 |
| FruR | 224-241 | 5.401 |
| PurR | 301-316 | 5.357 |