| TF name | Position | PWM scan score |
| ArcA | 270-330 | 24.975 |
| OxyR | 274-318 | 21.121 |
| OmpR | 317-336 | 19.303 |
| CytR | 252-291 | 18.852 |
| RcsB | 111-124 | 17.862 |
| Nac | 289-303 | 16.329 |
| H-NS | 318-332 | 15.525 |
| AraC | 108-125 | 13.831 |
| CysB | 290-331 | 13.600 |
| CRP | 255-276 | 13.553 |
| FNR | 321-342 | 13.196 |
| GlpR | 371-390 | 13.174 |
| ModE | 306-332 | 12.547 |
| UxuR | 306-323 | 12.425 |
| IHF | 313-325 | 12.408 |
| Lrp | 272-283 | 12.039 |
| MetJ | 374-381 | 11.820 |
| Ada | 280-307 | 11.754 |
| MetR | 132-155 | 11.684 |
| FruR | 259-276 | 11.561 |
| PhoP | 311-327 | 11.531 |
| UlaR | 270-289 | 11.529 |
| AgaR | 188-211 | 11.276 |
| Fis | 279-299 | 11.100 |
| Fur | 146-160 | 10.808 |
| TorR | 116-125 | 10.649 |
| GadE | 323-342 | 10.560 |
| PhoB | 320-339 | 9.945 |
| NagC | 320-342 | 9.805 |
| DeoR | 259-274 | 9.764 |
| GcvA | 315-343 | 9.711 |
| SoxS | 315-332 | 9.657 |
| TyrR | 360-381 | 9.554 |
| MelR | 328-345 | 9.389 |
| GntR | 114-133 | 9.209 |
| MarA | 313-333 | 9.081 |
| PspF | 341-357 | 8.758 |
| NarL | 124-130 | 8.728 |
| XylR | 362-379 | 8.537 |
| Rob | 113-133 | 8.344 |
| MalT | 199-208 | 8.269 |
| CueR | 42-60 | 8.041 |
| GalR | 349-364 | 7.933 |
| GalS | 349-364 | 7.933 |
| NorR | 115-131 | 7.257 |
| DnaA | 121-129 | 7.045 |
| CpxR | 316-330 | 6.515 |
| Mlc | 298-320 | 6.458 |
| FadR | 157-173 | 6.272 |
| IdnR | 307-322 | 6.101 |
| NarP | 64-70 | 5.659 |
| ArgP | 141-153 | 5.229 |