| TF name | Position | PWM scan score |
| ArcA | 313-373 | 33.369 |
| CysB | 345-386 | 22.899 |
| AgaR | 326-349 | 19.875 |
| DcuR | 309-363 | 17.860 |
| DeoR | 224-239 | 17.243 |
| NagC | 355-377 | 16.971 |
| PhoP | 353-369 | 15.414 |
| Fur | 308-322 | 15.343 |
| Fis | 300-320 | 15.061 |
| OmpR | 337-356 | 14.997 |
| MarA | 261-281 | 14.512 |
| GadE | 339-358 | 14.046 |
| CytR | 339-378 | 13.950 |
| GcvA | 345-373 | 13.801 |
| ArgR | 306-321 | 13.630 |
| OxyR | 204-248 | 13.126 |
| UlaR | 355-374 | 13.118 |
| FNR | 159-180 | 13.101 |
| PhoB | 236-255 | 12.836 |
| CRP | 349-370 | 12.784 |
| IHF | 344-356 | 12.583 |
| CpxR | 39-53 | 12.368 |
| ModE | 18-44 | 12.305 |
| TyrR | 353-374 | 12.075 |
| Nac | 326-340 | 12.006 |
| H-NS | 317-331 | 11.982 |
| LexA | 10-29 | 11.419 |
| TorR | 362-371 | 11.287 |
| Rob | 325-345 | 11.183 |
| ArgP | 36-48 | 11.180 |
| Lrp | 9-20 | 11.083 |
| XylR | 346-363 | 11.020 |
| Mlc | 221-243 | 10.618 |
| NorR | 351-367 | 10.487 |
| MetR | 22-45 | 10.240 |
| RcsB | 180-193 | 10.070 |
| SoxS | 244-261 | 10.049 |
| IdnR | 268-283 | 10.026 |
| NarL | 295-301 | 9.729 |
| MelR | 347-364 | 9.378 |
| Ada | 171-198 | 9.229 |
| GlpR | 212-231 | 8.871 |
| PspF | 349-365 | 8.748 |
| GalR | 277-292 | 7.918 |
| GalS | 277-292 | 7.918 |
| MetJ | 267-274 | 7.917 |
| UxuR | 250-267 | 7.859 |
| FhlA | 293-332 | 7.828 |
| AraC | 27-44 | 7.777 |
| DnaA | 252-260 | 7.406 |
| NarP | 340-346 | 7.347 |
| GntR | 314-333 | 6.923 |
| FruR | 242-259 | 6.667 |
| TrpR | 44-61 | 6.149 |
| FadR | 148-164 | 5.821 |
| PurR | 335-350 | 5.687 |
| MalT | 147-156 | 5.420 |
| LacI | 244-264 | 5.109 |