| TF name | Position | PWM scan score |
| ArcA | 81-141 | 26.471 |
| NagC | 347-369 | 19.794 |
| CysB | 197-238 | 19.463 |
| CytR | 343-382 | 18.235 |
| CRP | 278-299 | 18.200 |
| GadE | 125-144 | 18.176 |
| OmpR | 346-365 | 17.202 |
| PhoP | 197-213 | 17.196 |
| FNR | 344-365 | 16.461 |
| PhoB | 34-53 | 15.466 |
| GntR | 276-295 | 15.135 |
| H-NS | 191-205 | 14.857 |
| MelR | 268-285 | 14.631 |
| GcvA | 186-214 | 13.760 |
| Fis | 127-147 | 13.555 |
| CpxR | 353-367 | 13.538 |
| OxyR | 339-383 | 13.328 |
| IdnR | 363-378 | 13.256 |
| AgaR | 358-381 | 13.045 |
| XylR | 111-128 | 12.954 |
| DcuR | 100-154 | 12.911 |
| FadR | 169-185 | 12.856 |
| ModE | 126-152 | 12.779 |
| DeoR | 132-147 | 12.552 |
| UlaR | 356-375 | 11.949 |
| Lrp | 39-50 | 11.876 |
| TyrR | 186-207 | 11.847 |
| RcsB | 342-355 | 11.683 |
| MarA | 33-53 | 11.631 |
| NorR | 151-167 | 11.564 |
| FruR | 123-140 | 11.376 |
| TorR | 95-104 | 11.212 |
| Mlc | 343-365 | 11.118 |
| PspF | 347-363 | 11.031 |
| MetR | 202-225 | 10.524 |
| IHF | 6-18 | 10.496 |
| ArgP | 377-389 | 10.282 |
| SoxS | 369-386 | 10.211 |
| Nac | 88-102 | 10.143 |
| UxuR | 193-210 | 10.095 |
| ArgR | 336-351 | 9.827 |
| Rob | 190-210 | 9.502 |
| AraC | 207-224 | 8.515 |
| MetJ | 6-13 | 8.047 |
| Ada | 327-354 | 7.856 |
| Fur | 39-53 | 7.781 |
| RhaS | 382-398 | 7.767 |
| LexA | 90-109 | 7.745 |
| NtrC | 220-236 | 7.626 |
| NarL | 223-229 | 7.070 |
| GlpR | 127-146 | 6.909 |
| GalR | 74-89 | 6.741 |
| GalS | 74-89 | 6.741 |
| NarP | 153-159 | 6.464 |
| LacI | 366-386 | 5.804 |
| DnaA | 121-129 | 5.722 |
| CueR | 177-195 | 5.711 |
| MalT | 178-187 | 5.163 |